(Q34803464)

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RNA-seq based SNPs in some agronomically important oleiferous lines of Brassica rapa and their use for genome-wide linkage mapping and specific-region fine mapping

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scholarly article

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Europe PubMed Central

PubMed publication ID

4 August 2017

RNA-seq based SNPs in some agronomically important oleiferous lines of Brassica rapa and their use for genome-wide linkage mapping and specific-region fine mapping (English)

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

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based on heuristic

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based on heuristic

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Kumar Paritosh

1

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ORCID Public Data File 2021

author name string

Satish K Yadava

2

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Europe PubMed Central

PubMed publication ID

4 August 2017

Vibha Gupta

3

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Europe PubMed Central

PubMed publication ID

4 August 2017

Priya Panjabi-Massand

4

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Europe PubMed Central

PubMed publication ID

4 August 2017

Yashpal S Sodhi

5

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

Akshay K Pradhan

6

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Europe PubMed Central

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4 August 2017

Deepak Pental

7

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4 August 2017

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publication date

9 July 2013

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Europe PubMed Central

PubMed publication ID

4 August 2017

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Europe PubMed Central

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4 August 2017

14

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PubMed publication ID

4 August 2017

463

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

describes a project that uses

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MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

Single nucleotide polymorphism discovery from wheat next-generation sequence data.

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8 July 2018

Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711843

8 July 2018

Development and mapping of SNP assays in allotetraploid cotton

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711843

8 July 2018

Crop genomics: advances and applications

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8 July 2018

BRAD, the genetics and genomics database for Brassica plants

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711843

8 July 2018

From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.).

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Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers

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8 July 2018

The genome of the mesopolyploid crop species Brassica rapa

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8 July 2018

Identification, characterization and interpretation of single-nucleotide sequence variation in allopolyploid crop species

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8 July 2018

Genic microsatellite markers in Brassica rapa: development, characterization, mapping, and their utility in other cultivated and wild Brassica relatives.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711843

8 July 2018

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711843

8 July 2018

Transcript-specific, single-nucleotide polymorphism discovery and linkage analysis in hexaploid bread wheat (Triticum aestivum L.).

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711843

8 July 2018

Comparative methods for association studies: a case study on metabolite variation in a Brassica rapa core collection.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711843

8 July 2018

Integration of Solexa sequences on an ultradense genetic map in Brassica rapa L.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711843

8 July 2018

A sequence-based genetic linkage map as a reference for Brassica rapa pseudochromosome assembly.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711843

8 July 2018

Model SNP development for complex genomes based on hexaploid oat using high-throughput 454 sequencing technology.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711843

8 July 2018

SNP discovery by high-throughput sequencing in soybean

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711843

8 July 2018

Analysis of QTLs for erucic acid and oil content in seeds on A8 chromosome and the linkage drag between the alleles for the two traits in Brassica napus

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711843

8 July 2018

The Sequence Alignment/Map format and SAMtools

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711843

8 July 2018

Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711843

8 July 2018

Mapping short DNA sequencing reads and calling variants using mapping quality scores

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711843

8 July 2018

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

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8 July 2018

Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711843

8 July 2018

The ABC's of comparative genomics in the Brassicaceae: building blocks of crucifer genomes.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711843

8 July 2018

QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711843

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A sequence-tagged linkage map of Brassica rapa

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711843

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Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3711843

8 July 2018

MapChart: software for the graphical presentation of linkage maps and QTLs

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8 July 2018

Whole-genome sequencing of multiple Arabidopsis thaliana populations.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-463

21 January 2018

Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-463

21 January 2018

Characterization and comparison of gene-based simple sequence repeats across Brassica species.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-463

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Linkage mapping of genes controlling resistance to white rust (Albugo candida) in Brassica rapa (syn. campestris) and comparative mapping to Brassica napus and Arabidopsis thaliana

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-14-463

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Identification and mapping of resistance gene analogs and a white rust resistance locus in Brassica rapa ssp. oleifera

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21 January 2018

Brassica taxonomy based on nuclear restriction fragment length polymorphisms (RFLPs) : 2. Preliminary analysis of subspecies within B. rapa (syn. campestris) and B. oleracea

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https://pubmed.ncbi.nlm.nih.gov/23837684

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1 reference

https://pubmed.ncbi.nlm.nih.gov/23837684

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https://pubmed.ncbi.nlm.nih.gov/23837684

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https://pubmed.ncbi.nlm.nih.gov/23837684

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1 reference

https://pubmed.ncbi.nlm.nih.gov/23837684

12 December 2020

based on heuristic

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Identifiers

10.1186/1471-2164-14-463

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

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PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

4 August 2017

ResearchGate publication ID

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