(Q34845135)

4 August 2017

title

Restricted sidechain plasticity in the structures of native proteins and complexes (English)

1 reference

4 August 2017

Nobuyasu Koga

3

0 references

Sarel J Fleishman

object named as

Sarel J Fleishman

series ordinal

1

0 references

David Baker

object named as

David Baker

series ordinal

4

0 references

author name string

Sagar D Khare

series ordinal

2

1 reference

4 August 2017

publication date

1 April 2011

1 reference

4 August 2017

1 reference

4 August 2017

volume

20

1 reference

4 August 2017

issue

4

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4 August 2017

page(s)

753-757

1 reference

An exciting but challenging road ahead for computational enzyme design

4 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081553

Computational design of a PAK1 binding protein

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081553

Are scoring functions in protein-protein docking ready to predict interactomes? Clues from a novel binding affinity benchmark

8 July 2018

1 reference

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Macromolecular modeling with rosetta

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081553

Kemp elimination catalysts by computational enzyme design

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081553

De novo computational design of retro-aldol enzymes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081553

New algorithms and an in silico benchmark for computational enzyme design

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081553

PatchDock and SymmDock: servers for rigid and symmetric docking

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081553

Optimization of specificity in a cellular protein interaction network by negative selection

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081553

Design of a Novel Globular Protein Fold with Atomic-Level Accuracy

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081553

Exploring the origins of binding specificity through the computational redesign of calmodulin

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081553

Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081553

De novo protein design: fully automated sequence selection

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081553

Shape complementarity at protein/protein interfaces

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081553

Conformational analysis of the backbone-dependent rotamer preferences of protein sidechains

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081553

A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081553

Looking at proteins: representations, folding, packing, and design. Biophysical Society National Lecture, 1992

8 July 2018

1 reference

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Computational redesign of protein-protein interaction specificity

8 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FPRO.604

Automated design of specificity in molecular recognition

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FPRO.604

Computational alanine scanning of protein-protein interfaces

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3081553

The Highly Cooperative Folding of Small Naturally Occurring Proteins Is Likely the Result of Natural Selection

26 October 2018

1 reference

Crossref

https://api.crossref.org/works/10.1002%2FPRO.604

21 January 2018

Identifiers

DOI

10.1002/PRO.604

1 reference

4 August 2017

1 reference

4 August 2017

1 reference