(Q47610852)

4 February 2018

title

Computational redesign of protein-protein interaction specificity. (English)

1 reference

4 February 2018

protein-protein interaction

main subject

computational biology

1 reference

based on heuristic

inferred from title

1 reference

6

1 reference

4 February 2018

Tanja Kortemme

object named as

Tanja Kortemme

1

0 references

author name string

Lukasz A Joachimiak

2

1 reference

4 February 2018

Alex N Bullock

3

1 reference

4 February 2018

Aaron D Schuler

4

1 reference

4 February 2018

Barry L Stoddard

5

1 reference

4 February 2018

publication date

21 March 2004

1 reference

4 February 2018

Nature Structural & Molecular Biology

published in

1 reference

4 February 2018

volume

11

1 reference

4 February 2018

page(s)

371-379

1 reference

4 February 2018

issue

4

1 reference

4 February 2018

https://scigraph.springernature.com/pub.10.1038/nsmb749

exact match

0 references

cites work

Anatomy of hot spots in protein interfaces

1 reference

The atomic structure of protein-protein recognition sites

31 March 2020

1 reference

Calculation of HyHel10-lysozyme binding free energy changes: effect of ten point mutations.

31 March 2020

1 reference

Computational alanine scanning of the 1:1 human growth hormone-receptor complex

31 March 2020

1 reference

Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations

31 March 2020

1 reference

A simple physical model for binding energy hot spots in protein-protein complexes

31 March 2020

1 reference

SH3-SPOT: an algorithm to predict preferred ligands to different members of the SH3 gene family.

31 March 2020

1 reference

Distinct binding specificity of the multiple PDZ domains of INADL, a human protein with homology to INAD from Drosophila melanogaster

31 March 2020

1 reference

Amino acids determining enzyme-substrate specificity in prokaryotic and eukaryotic protein kinases

31 March 2020

1 reference

Interrogating protein interaction networks through structural biology

31 March 2020

1 reference

Virtual interaction profiles of proteins

31 March 2020

1 reference

De novo design of the hydrophobic cores of proteins

31 March 2020

1 reference

Conformational strain in the hydrophobic core and its implications for protein folding and design

31 March 2020

1 reference

Prudent modeling of core polar residues in computational protein design.

31 March 2020

1 reference

Review: protein design--where we were, where we are, where we're going.

31 March 2020

1 reference

Construction of new ligand binding sites in proteins of known structure. II. Grafting of a buried transition metal binding site into Escherichia coli thioredoxin

31 March 2020

1 reference

De novo protein design: fully automated sequence selection

31 March 2020

1 reference

Computer-based redesign of a protein folding pathway

31 March 2020

1 reference

High-resolution protein design with backbone freedom

31 March 2020

1 reference

Design of a Novel Globular Protein Fold with Atomic-Level Accuracy

31 March 2020

1 reference

Computational design of receptor and sensor proteins with novel functions

31 March 2020

1 reference

A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants

31 March 2020

1 reference

Automated design of specificity in molecular recognition

31 March 2020

1 reference

Modulating calmodulin binding specificity through computational protein design.

31 March 2020

1 reference

Exploring the origins of binding specificity through the computational redesign of calmodulin

31 March 2020

1 reference

The crystal structure of the DNase domain of colicin E7 in complex with its inhibitor Im7 protein

31 March 2020

1 reference

Selection of recently isolated colicinogenic Escherichia coli strains inhibitory to Escherichia coli O157:H7.

31 March 2020

1 reference

In vitro assessment of the cytotoxicity of nisin, pediocin, and selected colicins on simian virus 40-transfected human colon and Vero monkey kidney cells with trypan blue staining viability assays

31 March 2020

1 reference

Native protein sequences are close to optimal for their structures

31 March 2020

1 reference

An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes.

31 March 2020

1 reference

Evaluation of Models of Electrostatic Interactions in Proteins

31 March 2020

1 reference

Protein-protein interactions in colicin E9 DNase-immunity protein complexes. 2. Cognate and noncognate interactions that span the millimolar to femtomolar affinity range.

31 March 2020

1 reference

Immunity proteins and their specificity for endonuclease colicins: telling right from wrong in protein-protein recognition.

31 March 2020

1 reference

Specificity in protein-protein interactions: the structural basis for dual recognition in endonuclease colicin-immunity protein complexes

31 March 2020

1 reference

Analysis of protein-protein interactions and the effects of amino acid mutations on their energetics. The importance of water molecules in the binding epitope

31 March 2020

1 reference

Bayesian statistical analysis of protein side-chain rotamer preferences

31 March 2020

1 reference

Effective energy function for proteins in solution

31 March 2020

1 reference

Processing of X-ray diffraction data collected in oscillation mode

31 March 2020

1 reference

XtalView/Xfit--A versatile program for manipulating atomic coordinates and electron density

31 March 2020

1 reference

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

31 March 2020

1 reference

Rapid automated molecular replacement by evolutionary search

31 March 2020

1 reference

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NSMB749

1 reference

4 February 2018

PubMed ID

15034550

1 reference

4 February 2018