(Q34873625)

English

Systematic identification of transcriptional and post-transcriptional regulations in human respiratory epithelial cells during influenza A virus infection

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scholarly article

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Europe PubMed Central

PubMed publication ID

5 August 2017

Systematic identification of transcriptional and post-transcriptional regulations in human respiratory epithelial cells during influenza A virus infection (English)

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

influenza A virus

object named as

influenza A virus

1 reference

based on heuristic

inferred from title

author name string

Zhi-Ping Liu

1

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

Hulin Wu

2

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

Jian Zhu

3

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

Hongyu Miao

4

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

publication date

4 October 2014

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

BMC Bioinformatics

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

15

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

336

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

Sparse Additive Ordinary Differential Equations for Dynamic Gene Regulatory Network Modeling

1 reference

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8 July 2018

Dynamic regulatory network controlling TH17 cell differentiation

1 reference

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8 July 2018

More powerful significant testing for time course gene expression data using functional principal component analysis approaches

1 reference

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8 July 2018

TIGRESS: Trustful Inference of Gene REgulation using Stability Selection.

1 reference

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8 July 2018

Architecture of the human regulatory network derived from ENCODE data

1 reference

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8 July 2018

Inferring transcriptional and microRNA-mediated regulatory programs in glioblastoma

1 reference

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8 July 2018

Wisdom of crowds for robust gene network inference

1 reference

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8 July 2018

Integrative analysis of gene and miRNA expression profiles with transcription factor-miRNA feed-forward loops identifies regulators in human cancers

1 reference

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8 July 2018

Implication of inflammatory macrophages, nuclear receptors, and interferon regulatory factors in increased virulence of pandemic 2009 H1N1 influenza A virus after host adaptation

1 reference

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8 July 2018

Temporal- and strain-specific host microRNA molecular signatures associated with swine-origin H1N1 and avian-origin H7N7 influenza A virus infection

1 reference

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8 July 2018

Differential network biology

1 reference

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8 July 2018

Detecting novel associations in large data sets

1 reference

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8 July 2018

1 reference

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8 July 2018

Construction and analysis of an integrated regulatory network derived from high-throughput sequencing data

1 reference

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8 July 2018

1 reference

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8 July 2018

Boosting signal-to-noise in complex biology: prior knowledge is power

1 reference

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8 July 2018

miRTarBase: a database curates experimentally validated microRNA-target interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

The UCSC Genome Browser database: update 2011

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

Inferring regulatory networks from expression data using tree-based methods

1 reference

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8 July 2018

Respiratory epithelial cells in innate immunity to influenza virus infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

Host gene expression profiling in influenza A virus-infected lung epithelial (A549) cells: a comparative analysis between highly pathogenic and modified H5N1 viruses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

Response network analysis of differential gene expression in human epithelial lung cells during avian influenza infections

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

Revealing strengths and weaknesses of methods for gene network inference

1 reference

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An atlas of combinatorial transcriptional regulation in mouse and man

1 reference

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8 July 2018

A novel microRNA and transcription factor mediated regulatory network in schizophrenia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

Physiological and pathological roles for microRNAs in the immune system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

A physical and regulatory map of host-influenza interactions reveals pathways in H1N1 infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

Human host factors required for influenza virus replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

TransmiR: a transcription factor-microRNA regulation database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

Pandemic potential of a strain of influenza A (H1N1): early findings

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

DIANA-microT web server: elucidating microRNA functions through target prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

A census of human transcription factors: function, expression and evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

1 reference

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8 July 2018

miRecords: an integrated resource for microRNA-target interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

Network evaluation from the consistency of the graph structure with the measured data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

Network inference using informative priors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

microRNAs and the immune response

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

miRBase: tools for microRNA genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals

1 reference

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8 July 2018

Type III interferon (IFN) induces a type I IFN-like response in a restricted subset of cells through signaling pathways involving both the Jak-STAT pathway and the mitogen-activated protein kinases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

How to infer gene networks from expression profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

A general framework for weighted gene co-expression network analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

STEM: a tool for the analysis of short time series gene expression data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

Human protein reference database--2006 update

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

TarBase: A comprehensive database of experimentally supported animal microRNA targets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

Combinatorial microRNA target predictions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

Reverse engineering of regulatory networks in human B cells

1 reference

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8 July 2018

Reactome: a knowledgebase of biological pathways

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TRED: a Transcriptional Regulatory Element Database and a platform for in silico gene regulation studies

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8 July 2018

Human MicroRNA targets

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8 July 2018

A new dynamic Bayesian network (DBN) approach for identifying gene regulatory networks from time course microarray data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

Fast algorithm for detecting community structure in networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

MicroRNAs: small RNAs with a big role in gene regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

Transcriptional mechanisms regulating alveolar epithelial cell-specific CCL5 secretion in pulmonary tuberculosis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

The role of suppressors of cytokine signaling (SOCS) proteins in regulation of the immune response

1 reference

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8 July 2018

MicroRNAs: genomics, biogenesis, mechanism, and function

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

Inferring gene networks from time series microarray data using dynamic Bayesian networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

Cellular transcriptional profiling in influenza A virus-infected lung epithelial cells: the role of the nonstructural NS1 protein in the evasion of the host innate defense and its potential contribution to pandemic influenza

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

Multiple regulatory domains of IRF-5 control activation, cellular localization, and induction of chemokines that mediate recruitment of T lymphocytes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

Community structure in social and biological networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

Reverse engineering gene networks using singular value decomposition and robust regression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

Network motifs in the transcriptional regulation network of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

The interferon-alpha/beta system in antiviral responses: a multimodal machinery of gene regulation by the IRF family of transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287445

8 July 2018

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

1 reference

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8 July 2018

Identifying regulatory networks by combinatorial analysis of promoter elements

1 reference

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8 July 2018

Molecular pathogenesis of influenza A virus infection and virus-induced regulation of cytokine gene expression

1 reference

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8 July 2018

Using Bayesian networks to analyze expression data

1 reference

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8 July 2018

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8 July 2018

Gene ontology: tool for the unification of biology

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8 July 2018

KEGG: kyoto encyclopedia of genes and genomes

1 reference

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8 July 2018

Emergence of Scaling in Random Networks

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8 July 2018

GeneCards: a novel functional genomics compendium with automated data mining and query reformulation support

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8 July 2018

Coactivator TIF1beta interacts with transcription factor C/EBPbeta and glucocorticoid receptor to induce alpha1-acid glycoprotein gene expression

1 reference

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8 July 2018

A C. elegans genome-scale microRNA network contains composite feedback motifs with high flux capacity.

1 reference

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26 October 2018

Analysis of gene expression in human bronchial epithelial cells upon influenza virus infection and regulation by p38 mitogen-activated protein kinase and c-Jun-N-terminal kinase

1 reference

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26 October 2018

FANMOD: a tool for fast network motif detection.

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26 October 2018

Computational discovery of gene modules and regulatory networks

1 reference

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26 October 2018

Gene networks inference using dynamic Bayesian networks.

1 reference

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26 October 2018

Identifiers

10.1186/1471-2105-15-336

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

DBLP publication ID

journals/bmcbi/LiuWZM14

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

ResearchGate publication ID

0 references

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