(Q34898816)

5 August 2017

title

Method of predicting splice sites based on signal interactions (English)

1 reference

5 August 2017

Igor B Rogozin

2

0 references

author name string

Alexander Churbanov

series ordinal

1

1 reference

5 August 2017

Jitender S Deogun

series ordinal

3

1 reference

5 August 2017

Hesham Ali

series ordinal

4

1 reference

5 August 2017

publication date

3 April 2006

1 reference

5 August 2017

1 reference

5 August 2017

volume

1

1 reference

5 August 2017

page(s)

10

1 reference

A method of precise mRNA/DNA homology-based gene structure prediction

5 August 2017

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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Alternative splicing: multiple control mechanisms and involvement in human disease

8 July 2018

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Exon Identity Established through Differential Antagonism between Exonic Splicing Silencer-Bound hnRNP A1 and Enhancer-Bound SR Proteins

8 July 2018

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Presence of ATG triplets in 5' untranslated regions of eukaryotic cDNAs correlates with a 'weak' context of the start codon

8 July 2018

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A computational analysis of sequence features involved in recognition of short introns

8 July 2018

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The role of U2AF35 and U2AF65 in enhancer-dependent splicing

8 July 2018

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Pre-mRNA splicing in the new millennium

8 July 2018

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BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

8 July 2018

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GeneSplicer: a new computational method for splice site prediction

8 July 2018

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8 July 2018

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8 July 2018

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Patterns of variant polyadenylation signal usage in human genes

8 July 2018

1 reference

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Mechanisms of fidelity in pre-mRNA splicing

8 July 2018

1 reference

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Exonic splicing enhancer motif recognized by human SC35 under splicing conditions

8 July 2018

1 reference

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Assembling genes from predicted exons in linear time with dynamic programming.

8 July 2018

1 reference

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Substrate specificities of SR proteins in constitutive splicing are determined by their RNA recognition motifs and composite pre-mRNA exonic elements

8 July 2018

1 reference

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A systematic analysis of the factors that determine the strength of pre-mRNA splicing enhancers.

8 July 2018

1 reference

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Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation

8 July 2018

1 reference

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Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins

8 July 2018

1 reference

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Improved splice site detection in Genie

8 July 2018

1 reference

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Analysis of donor splice sites in different eukaryotic organisms.

8 July 2018

1 reference

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Prediction of complete gene structures in human genomic DNA

8 July 2018

1 reference

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Identification of protein coding regions in the human genome by quadratic discriminant analysis

8 July 2018

1 reference

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Logitlinear models for the prediction of splice sites in plant pre-mRNA sequences

8 July 2018

1 reference

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Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information

8 July 2018

1 reference

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Fitting a mixture model by expectation maximization to discover motifs in biopolymers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526722

SITEVIDEO: a computer system for functional site analysis and recognition. Investigation of the human splice sites.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526722

RNA binding specificity of hnRNP A1: significance of hnRNP A1 high-affinity binding sites in pre-mRNA splicing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526722

Computer methods to locate signals in nucleic acid sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526722

Prediction of splice junctions in mRNA sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526722

Application of learning techniques to splicing site recognition.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526722

RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526722

An analysis of 5'-noncoding sequences from 699 vertebrate messenger RNAs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526722

New analytical tool for analysis of splice site sequence determinants

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526722

Statistical analysis of mammalian pre-mRNA splicing sites.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526722

Neural network detects errors in the assignment of mRNA splice sites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526722

Prediction of human mRNA donor and acceptor sites from the DNA sequence

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526722

Prediction of gene structure

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526722

Analysis of context of 5'-splice site sequences in mammalian mRNA precursors by subclass method

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526722

Features of spliceosome evolution and function inferred from an analysis of the information at human splice sites.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526722

A new approach for gene annotation using unambiguous sequence joining.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526722

MISAE: a new approach for regulatory motif extraction.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526722

Prediction of splice sites with dependency graphs and their expanded bayesian networks

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526722

Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526722

Logos: a modular bayesian model for de novo motif detection.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526722

Modeling splicing sites with pairwise correlations

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526722

Modeling splice sites with Bayes networks.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526722

A weight array method for splicing signal analysis.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526722

Syntactic pattern analysis of 5'-splice site sequences of mRNA precursors in higher eukaryote genes

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16584568

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Recognition patterns for exon-intron junctions in higher organisms as revealed by a computer search

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16584568

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Human pre-mRNA splicing signals

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16584568

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1745-6150-1-10

1 reference

Dimensions Publication ID

5 August 2017

0 references

1 reference

5 August 2017

1 reference