(Q34908365)

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Host genetics and diet, but not immunoglobulin A expression, converge to shape compositional features of the gut microbiome in an advanced intercross population of mice

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Europe PubMed Central

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25 February 2020

Host genetics and diet, but not immunoglobulin A expression, converge to shape compositional features of the gut microbiome in an advanced intercross population of mice (English)

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25 February 2020

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25 February 2020

6

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Kunjie Hua

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25 February 2020

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Larry J Leamy

1

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25 February 2020

Scott A Kelly

2

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25 February 2020

Joseph Nietfeldt

3

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25 February 2020

Ryan M Legge

4

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25 February 2020

Fangrui Ma

5

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25 February 2020

Rohita Sinha

7

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25 February 2020

Daniel A Peterson

8

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25 February 2020

Andrew K Benson

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25 February 2020

Daniel Pomp

11

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25 February 2020

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1 January 2014

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25 February 2020

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25 February 2020

15

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25 February 2020

12

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25 February 2020

552

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25 February 2020

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Creative Commons Attribution 2.0 Generic

1 December 2014

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April 2022 Public Data File from Crossref

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0 references

Foxp3(+) T cells regulate immunoglobulin a selection and facilitate diversification of bacterial species responsible for immune homeostasis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

Innate and adaptive immunity interact to quench microbiome flagellar motility in the gut

1 reference

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8 July 2018

Genome-wide mapping of gene-microbiota interactions in susceptibility to autoimmune skin blistering

1 reference

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8 July 2018

Temporal stability of the mouse gut microbiota in relation to innate and adaptive immunity

1 reference

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8 July 2018

Regulation of intestinal microbiota by the NLR protein family

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

Genetic control of obesity and gut microbiota composition in response to high-fat, high-sucrose diet in mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

CD-HIT: accelerated for clustering the next-generation sequencing data

1 reference

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8 July 2018

Exercise and diet affect quantitative trait loci for body weight and composition traits in an advanced intercross population of mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

Gut microbiome composition is linked to whole grain-induced immunological improvements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

A metagenome-wide association study of gut microbiota in type 2 diabetes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

The gut microbiota in IBD.

1 reference

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8 July 2018

Murine gut microbiota is defined by host genetics and modulates variation of metabolic traits

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

Inflammatory bowel diseases phenotype, C. difficile and NOD2 genotype are associated with shifts in human ileum associated microbial composition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

A metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

IgA synthesis: a form of functional immune adaptation extending beyond gut.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

Structural resilience of the gut microbiota in adult mice under high-fat dietary perturbations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

The genome architecture of the Collaborative Cross mouse genetic reference population

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

Inflammasome-mediated dysbiosis regulates progression of NAFLD and obesity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

Age, microbiota, and T cells shape diverse individual IgA repertoires in the intestine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

Gut microbiota is a key modulator of insulin resistance in TLR 2 knockout mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

Crosstalk between B lymphocytes, microbiota and the intestinal epithelium governs immunity versus metabolism in the gut.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

Colonic mucosa-associated microbiota is influenced by an interaction of Crohn disease and FUT2 (Secretor) genotype

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

Linking long-term dietary patterns with gut microbial enterotypes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

QTLRel: an R package for genome-wide association studies in which relatedness is a concern

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

Genetic polymorphisms of innate immunity-related inflammatory pathways and their association with factors related to type 2 diabetes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

The human gut microbiome: ecology and recent evolutionary changes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

Resistant starches types 2 and 4 have differential effects on the composition of the fecal microbiota in human subjects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

The role of the gut microbiota in nonalcoholic fatty liver disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

Secretory IgA: arresting microbial pathogens at epithelial borders

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

Genome-wide association studies and the problem of relatedness among advanced intercross lines and other highly recombinant populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

Genetic architecture of voluntary exercise in an advanced intercross line of mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

Metabolic syndrome and altered gut microbiota in mice lacking Toll-like receptor 5

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8 July 2018

Specific antibody activity, glycan heterogeneity and polyreactivity contribute to the protective activity of S-IgA at mucosal surfaces

1 reference

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Diet-induced metabolic improvements in a hamster model of hypercholesterolemia are strongly linked to alterations of the gut microbiota

1 reference

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8 July 2018

Genome Reshuffling for Advanced Intercross Permutation (GRAIP): simulation and permutation for advanced intercross population analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

Pleiotropic patterns of quantitative trait loci for 70 murine skeletal traits.

1 reference

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8 July 2018

Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome

1 reference

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Bsx, a novel hypothalamic factor linking feeding with locomotor activity, is regulated by energy availability

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Communicable ulcerative colitis induced by T-bet deficiency in the innate immune system

1 reference

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1 reference

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8 July 2018

An obesity-associated gut microbiome with increased capacity for energy harvest

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4290092

8 July 2018

Microbial ecology: human gut microbes associated with obesity

1 reference

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8 July 2018

Poor performance of bootstrap confidence intervals for the location of a quantitative trait locus

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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8 July 2018

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1 reference

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1 reference

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8 July 2018

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1 reference

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1 reference

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1 reference

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21 January 2018

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1 reference

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21 January 2018

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1 reference

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21 January 2018

The inhibitory receptor PD-1 regulates IgA selection and bacterial composition in the gut

1 reference

https://pubmed.ncbi.nlm.nih.gov/25516416

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A simple regression method for mapping quantitative trait loci in line crosses using flanking markers

1 reference

https://pubmed.ncbi.nlm.nih.gov/25516416

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Quantitative PCR assays for mouse enteric flora reveal strain-dependent differences in composition that are influenced by the microenvironment

1 reference

https://pubmed.ncbi.nlm.nih.gov/25516416

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/S13059-014-0552-6

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25516416%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

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https://api.fatcat.wiki/v0/release/whwai57bdfhvfpz4jeagsjjqnm

24 November 2022

based on heuristic

mapped directly with Wikidata item

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25516416%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25516416%20AND%20SRC:MED&resulttype=core&format=json

25 February 2020

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