(Q34311640)

English

Inflammatory bowel diseases phenotype, C. difficile and NOD2 genotype are associated with shifts in human ileum associated microbial composition

scientific article

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scholarly article

1 reference

Europe PubMed Central

1 August 2017

Inflammatory bowel diseases phenotype, C. difficile and NOD2 genotype are associated with shifts in human ileum associated microbial composition (English)

1 reference

Europe PubMed Central

1 August 2017

inflammatory bowel diseases

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Clostridium difficile

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1 reference

based on heuristic

inferred from title

Erica Sodergren

17

object named as

Erica Sodergren

0 references

Charles E Robertson

object named as

Charles E Robertson

11

0 references

George Weinstock

object named as

George M Weinstock

16

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object named as

Noam Harpaz

14

0 references

12

object named as

Norman R Pace

1 reference

Europe PubMed Central

1 August 2017

18

object named as

Daniel N Frank

1 reference

Europe PubMed Central

1 August 2017

author name string

Ellen Li

1

1 reference

Europe PubMed Central

1 August 2017

Christina M Hamm

2

1 reference

Europe PubMed Central

1 August 2017

Ajay S Gulati

3

1 reference

Europe PubMed Central

1 August 2017

R Balfour Sartor

4

1 reference

Europe PubMed Central

1 August 2017

Hongyan Chen

5

1 reference

Europe PubMed Central

1 August 2017

Xiao Wu

6

1 reference

Europe PubMed Central

1 August 2017

Tianyi Zhang

7

1 reference

Europe PubMed Central

1 August 2017

F James Rohlf

8

1 reference

Europe PubMed Central

1 August 2017

Wei Zhu

9

1 reference

Europe PubMed Central

1 August 2017

Chi Gu

10

1 reference

Europe PubMed Central

1 August 2017

Edgar C Boedeker

13

1 reference

Europe PubMed Central

1 August 2017

Jeffrey Yuan

15

1 reference

Europe PubMed Central

1 August 2017

language of work or name

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publication date

13 June 2012

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Europe PubMed Central

1 August 2017

1 reference

Europe PubMed Central

1 August 2017

7

1 reference

Europe PubMed Central

1 August 2017

6

1 reference

Europe PubMed Central

1 August 2017

e26284

1 reference

Europe PubMed Central

1 August 2017

copyright license

Creative Commons Attribution 4.0 International

13 June 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Distinct and overlapping genetic loci in Crohn's disease and ulcerative colitis: correlations with pathogenesis

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Influence of Crohn's disease risk alleles and smoking on disease location

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6 July 2018

Nod2 is essential for temporal development of intestinal microbial communities.

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Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47

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Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

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6 July 2018

Disease phenotype and genotype are associated with shifts in intestinal-associated microbiota in inflammatory bowel diseases

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Virus-plus-susceptibility gene interaction determines Crohn's disease gene Atg16L1 phenotypes in intestine

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Response of subgingival bacteria to smoking cessation

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Clinical practice guidelines for Clostridium difficile infection in adults: 2010 update by the society for healthcare epidemiology of America (SHEA) and the infectious diseases society of America (IDSA).

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A human gut microbial gene catalogue established by metagenomic sequencing

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6 July 2018

NOD2 status and human ileal gene expression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3374607

6 July 2018

Inflammatory bowel disease

1 reference

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6 July 2018

Enteric defensins are essential regulators of intestinal microbial ecology

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6 July 2018

The NIH Human Microbiome Project

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6 July 2018

Nod2 is required for the regulation of commensal microbiota in the intestine

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6 July 2018

Prolonged impact of antibiotics on intestinal microbial ecology and susceptibility to enteric Salmonella infection

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6 July 2018

Infernal 1.0: inference of RNA alignments

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6 July 2018

Metagenomic pyrosequencing and microbial identification

1 reference

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6 July 2018

Colorectal cancer incidence in the United States, 1999-2004 : an updated analysis of data from the National Program of Cancer Registries and the Surveillance, Epidemiology, and End Results Program

1 reference

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6 July 2018

Antimicrobial prophylaxis for colorectal surgery

1 reference

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6 July 2018

The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing

1 reference

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6 July 2018

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

1 reference

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6 July 2018

Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3374607

6 July 2018

A key role for autophagy and the autophagy gene Atg16l1 in mouse and human intestinal Paneth cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3374607

6 July 2018

Metagenomic approaches for defining the pathogenesis of inflammatory bowel diseases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3374607

6 July 2018

Risk factors for surgical recurrence after ileocolic resection of Crohn's disease.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3374607

6 July 2018

Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes

1 reference

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6 July 2018

Analysis of bacterial bowel communities of IBD patients: what has it revealed?

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6 July 2018

Microbial influences in inflammatory bowel diseases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3374607

6 July 2018

Decreased diversity of the fecal Microbiome in recurrent Clostridium difficile-associated diarrhea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3374607

6 July 2018

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3374607

6 July 2018

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3374607

6 July 2018

Paneth cells, defensins, and the commensal microbiota: a hypothesis on intimate interplay at the intestinal mucosa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3374607

6 July 2018

A Nonsynonymous SNP in ATG16L1 Predisposes to Ileal Crohn’s Disease and Is Independent of CARD15 and IBD5

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3374607

6 July 2018

Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis

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6 July 2018

Microbial ecology: human gut microbes associated with obesity

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The role of microbes in Crohn's disease

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6 July 2018

Smoking and inflammatory bowel disease: a meta-analysis

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3374607

6 July 2018

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

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6 July 2018

The Montreal classification of inflammatory bowel disease: controversies, consensus, and implications

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6 July 2018

European evidence based consensus on the diagnosis and management of Crohn's disease: definitions and diagnosis

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6 July 2018

Expression of NOD2 in Paneth cells: a possible link to Crohn's ileitis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3374607

6 July 2018

The contribution of NOD2 gene mutations to the risk and site of disease in inflammatory bowel disease

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6 July 2018

CARD15/NOD2 mutational analysis and genotype-phenotype correlation in 612 patients with inflammatory bowel disease

1 reference

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6 July 2018

A frameshift mutation in NOD2 associated with susceptibility to Crohn's disease

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6 July 2018

Association of NOD2 leucine-rich repeat variants with susceptibility to Crohn's disease

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6 July 2018

The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations.

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6 July 2018

A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes

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21 January 2018

Incidence of Clostridium difficile infection in inflammatory bowel disease.

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0026284

21 January 2018

Decreased Paneth cell defensin expression in ileal Crohn's disease is independent of inflammation, but linked to the NOD2 1007fs genotype.

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28 October 2018

Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with ileal Crohn's disease

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28 October 2018

Inflammatory bowel disease unclassified and indeterminate colitis: the role of the pathologist

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28 October 2018

Clinical and molecular characteristics of isolated colonic Crohn's disease.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3374607

28 October 2018

Reduced alpha-defensin expression is associated with inflammation and not NOD2 mutation status in ileal Crohn's disease.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3374607

28 October 2018

Nod2 mutation in Crohn's disease potentiates NF-kappaB activity and IL-1beta processing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3374607

28 October 2018

Development of an extensive set of 16S rDNA-targeted primers for quantification of pathogenic and indigenous bacteria in faecal samples by real-time PCR.

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28 October 2018

Quantitative real-time PCR using TaqMan and SYBR Green for Actinobacillus actinomycetemcomitans, Porphyromonas gingivalis, Prevotella intermedia, tetQ gene and total bacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3374607

28 October 2018

An empirical comparison of permutation methods for tests of partial regression coefficients in a linear model

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0026284

21 January 2018

Does cigarette smoking influence the phenotype of Crohn's disease? Analysis using the Montreal classification

1 reference

https://pubmed.ncbi.nlm.nih.gov/22719818

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Impact of Clostridium difficile on inflammatory bowel disease

1 reference

https://pubmed.ncbi.nlm.nih.gov/22719818

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Changes in predominant bacterial populations in human faeces with age and with Clostridium difficile infection

1 reference

https://pubmed.ncbi.nlm.nih.gov/22719818

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PONE.0026284

1 reference

Europe PubMed Central

1 August 2017

2012PLoSO...726284L

0 references

1 reference

Europe PubMed Central

1 August 2017

1 reference

Europe PubMed Central

1 August 2017

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