(Q34977769)

5 August 2017

title

Nucleosome positioning in a model of active chromatin remodeling enzymes (English)

1 reference

5 August 2017

Ranjith Padinhateeri

1

1 reference

5 August 2017

John F Marko

series ordinal

2

1 reference

5 August 2017

language of work or name

English

0 references

publication date

25 April 2011

1 reference

Proceedings of the National Academy of Sciences of the United States of America

5 August 2017

published in

1 reference

5 August 2017

volume

108

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5 August 2017

issue

19

1 reference

5 August 2017

page(s)

7799-7803

1 reference

Structural constraints revealed in consistent nucleosome positions in the genome of S. cerevisiae

5 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3093463

New insights into two distinct nucleosome distributions: comparison of cross-platform positioning datasets in the yeast genome.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3093463

The chromatin remodeller ACF acts as a dimeric motor to space nucleosomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3093463

Predicting nucleosome positions on the DNA: combining intrinsic sequence preferences and remodeler activities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3093463

Nucleosome positioning and gene regulation: advances through genomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3093463

The DNA-encoded nucleosome organization of a eukaryotic genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3093463

Preferentially quantized linker DNA lengths in Saccharomyces cerevisiae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3093463

A high-resolution atlas of nucleosome occupancy in yeast

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3093463

Nucleosome hopping and sliding kinetics determined from dynamics of single chromatin fibers in Xenopus egg extracts

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3093463

Conformational flexibility in the chromatin remodeler RSC observed by electron microscopy and the orthogonal tilt reconstruction method

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3093463

Micromanipulation studies of chromatin fibers in Xenopus egg extracts reveal ATP-dependent chromatin assembly dynamics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3093463

Analysis of nucleosome repositioning by yeast ISWI and Chd1 chromatin remodeling complexes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3093463

Chromatin remodeling by ISW2 and SWI/SNF requires DNA translocation inside the nucleosome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3093463

Chromatin remodeling by nucleosome disassembly in vitro

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3093463

Chromatin remodeling by ATP-dependent molecular machines.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3093463

The structure of DNA in the nucleosome core

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3093463

Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3093463

ATP-dependent chromatin-remodeling complexes.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3093463

Nucleosome mobilization catalysed by the yeast SWI/SNF complex

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3093463

Are nucleosome positions in vivo primarily determined by histone-DNA sequence preferences?

8 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1015206108

The chromatin-remodeling enzyme ACF is an ATP-dependent DNA length sensor that regulates nucleosome spacing

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1015206108

Exact stochastic simulation of coupled chemical reactions

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1015206108

Polymer reptation and nucleosome repositioning

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21518900

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Filling of the one-dimensional lattice by k-mers proceeds via fast power-law-like kinetics

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21518900

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1015206108

1 reference

5 August 2017

0 references

1 reference

5 August 2017

1 reference