(Q42921943)

11 November 2017

Are nucleosome positions in vivo primarily determined by histone-DNA sequence preferences? (English)

1 reference

11 November 2017

Arnold Stein

1

1 reference

11 November 2017

Taichi E Takasuka

series ordinal

2

1 reference

11 November 2017

Clayton K Collings

series ordinal

3

1 reference

11 November 2017

language of work or name

English

0 references

publication date

24 November 2009

1 reference

11 November 2017

Nucleic Acids Research

1 reference

11 November 2017

38

1 reference

11 November 2017

3

1 reference

11 November 2017

709-719

1 reference

Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo

11 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

What controls nucleosome positions?

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

Evaluation of next generation sequencing platforms for population targeted sequencing studies

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

Poly(dA:dT) tracts: major determinants of nucleosome organization

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

The DNA-encoded nucleosome organization of a eukaryotic genome

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

The diploid genome sequence of an Asian individual

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

Sequence information encoded in DNA that may influence long-range chromatin structure correlates with human chromosome functions

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

Dynamics and interplay of nuclear architecture, genome organization, and gene expression

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

A high-resolution atlas of nucleosome occupancy in yeast

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

Choreography for nucleosomes: the conformational freedom of the nucleosomal filament and its limitations

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

Nucleosome positioning signals in genomic DNA

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

A genomic code for nucleosome positioning

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

Aspects of large-scale chromatin structures in mouse liver nuclei can be predicted from the DNA sequence

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

Genome-scale identification of nucleosome positions in S. cerevisiae

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

The structure of DNA in the nucleosome core

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

Poly(dA-dT) promoter elements increase the equilibrium accessibility of nucleosomal DNA target sites

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

ATP-dependent chromatin-remodeling complexes.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

Unique translational positioning of nucleosomes on synthetic DNAs

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

Crystal structure of the nucleosome core particle at 2.8 A resolution

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

A chromatin folding model that incorporates linker variability generates fibers resembling the native structures

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

Nucleosome positioning on the MMTV LTR results from the frequency-biased occupancy of multiple frames

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

Structural features of a phased nucleosome core particle

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

Nucleosome reconstitution on plasmid-inserted poly(dA) . poly(dT)

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

Face to phase with nucleosomes

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

Chromatin Structure: A Repeating Unit of Histones and DNA

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

Naturally occurring poly(dA-dT) sequences are upstream promoter elements for constitutive transcription in yeast

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

Statistical distributions of nucleosomes: nonrandom locations by a stochastic mechanism

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

Location of nucleosomes in simian virus 40 chromatin

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

Chromatin and core particles formed from the inner histones and synthetic polydeoxyribonucleotides of defined sequence

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

Re-cracking the nucleosome positioning code

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817465

Chromatin Fiber Folding: Requirement for the Histone H4 N-terminal Tail

16 August 2018

1 reference

12 December 2020

Yeast Chromatin. Preparation from Isolated Nuclei, Histone Composition and Transcription Capacity

1 reference

12 December 2020

Distinguishing between mechanisms of eukaryotic transcriptional activation with bacteriophage T7 RNA polymerase

1 reference

12 December 2020

New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning

1 reference

12 December 2020

Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKP1043

1 reference

release_usbu4ndgxzginldatn7ya7xg2m

11 November 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/usbu4ndgxzginldatn7ya7xg2m

24 November 2022

mapped directly with Wikidata item

1 reference

11 November 2017

PubMed publication ID

19934265

1 reference