(Q34993206)

5 August 2017

title

Predicting gene regulatory networks of soybean nodulation from RNA-Seq transcriptome data (English)

1 reference

5 August 2017

0 references

0 references

1 reference

3

Gary Stacey

1 reference

5 August 2017

Mingzhu Zhu

1

1 reference

5 August 2017

Jeremy L Dahmen

series ordinal

2

1 reference

5 August 2017

Jianlin Cheng

series ordinal

4

1 reference

5 August 2017

publication date

22 September 2013

1 reference

5 August 2017

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5 August 2017

volume

14

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5 August 2017

page(s)

278

1 reference

describes a project that uses

5 August 2017

edgeR

object named as

EdgeR

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-14-278

0 references

cites work

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8 July 2018

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8 July 2018

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8 July 2018

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The salt- and drought-inducible poplar GRAS protein SCL7 confers salt and drought tolerance in Arabidopsis thaliana

8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

8 July 2018

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DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

8 July 2018

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GRAS-domain transcription factors that regulate plant development

8 July 2018

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MicroRNAs in the rhizobia legume symbiosis

8 July 2018

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MEME SUITE: tools for motif discovery and searching

8 July 2018

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Large-scale mRNA sequencing determines global regulation of RNA editing during brain development.

8 July 2018

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Transcriptome-wide identification of novel imprinted genes in neonatal mouse brain

8 July 2018

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Alternative isoform regulation in human tissue transcriptomes

8 July 2018

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Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

8 July 2018

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Coordinating nodule morphogenesis with rhizobial infection in legumes.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854569

Legume transcription factors: global regulators of plant development and response to the environment.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854569

Quantifying similarity between motifs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854569

Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles

8 July 2018

1 reference

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A gain-of-function mutation in a cytokinin receptor triggers spontaneous root nodule organogenesis.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854569

Reverse engineering of regulatory networks in human B cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854569

The Gene Ontology (GO) database and informatics resource

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854569

Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854569

Combining location and expression data for principled discovery of genetic regulatory network models

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854569

Hydratases involved in nitrile conversion: screening, characterization and application

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854569

SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854569

A maize cytokinin gene encoding an O-glucosyltransferase specific to cis-zeatin

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854569

Plant GRAS and metazoan STATs: one family?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854569

Isolation of a cytokinin gene, ZOG1, encoding zeatin O-glucosyltransferase from Phaseolus lunatus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854569

A small family of nodule specific genes from soybean

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854569

Complete transcriptome of the soybean root hair cell, a single-cell model, and its alteration in response to Bradyrhizobium japonicum infection

8 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-278

Module networks revisited: computational assessment and prioritization of model predictions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-278

Minreg: inferring an active regulator set.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-278

A cytokinin perception mutant colonized by Rhizobium in the absence of nodule organogenesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-278

NSP1 of the GRAS protein family is essential for rhizobial Nod factor-induced transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-278

Nodulation signaling in legumes requires NSP2, a member of the GRAS family of transcriptional regulators

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-278

Lotus japonicus nodulation requires two GRAS domain regulators, one of which is functionally conserved in a non-legume.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-278

Function of GRAS proteins in root nodule symbiosis is retained in homologs of a non-legume, rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-278

GRAS proteins form a DNA binding complex to induce gene expression during nodulation signaling in Medicago truncatula.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-278

An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854569

Four genes of Medicago truncatula controlling components of a nod factor transduction pathway.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3854569

The Medicago truncatula CRE1 cytokinin receptor regulates lateral root development and early symbiotic interaction with Sinorhizobium meliloti

26 October 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-278

Nodulation signaling in legumes depends on an NSP1-NSP2 complex

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24053776

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-14-278

1 reference

5 August 2017

DBLP publication ID

journals/bmcbi/ZhuDSC13

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

5 August 2017

1 reference