(Q34993956)

5 August 2017

title

Differences in DNA methylation between human neuronal and glial cells are concentrated in enhancers and non-CpG sites (English)

1 reference

5 August 2017

0 references

6

Marina Bibikova

0 references

Eugene Koonin

12

object named as

Eugene V Koonin

1 reference

5 August 2017

8

William Byne

1 reference

5 August 2017

11

Yasmin L Hurd

1 reference

5 August 2017

Alexey Kozlenkov

1

1 reference

5 August 2017

Panos Roussos

2

1 reference

5 August 2017

Alisa Timashpolsky

3

1 reference

5 August 2017

Mihaela Barbu

4

1 reference

5 August 2017

Sergei Rudchenko

5

1 reference

5 August 2017

Brandy Klotzle

7

1 reference

5 August 2017

Rebecca Lyddon

9

1 reference

5 August 2017

Antonio Fabio Di Narzo

10

1 reference

5 August 2017

Stella Dracheva

13

1 reference

5 August 2017

language of work or name

English

0 references

publication date

20 September 2013

1 reference

5 August 2017

published in

Nucleic Acids Research

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5 August 2017

volume

42

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5 August 2017

issue

1

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5 August 2017

page(s)

109-127

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Global epigenomic reconfiguration during mammalian brain development

5 August 2017

cites work

1 reference

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8 July 2018

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Base-pair resolution DNA methylation sequencing reveals profoundly divergent epigenetic landscapes in acute myeloid leukemia

8 July 2018

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8 July 2018

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8 July 2018

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Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome

8 July 2018

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DNA methylation signatures in development and aging of the human prefrontal cortex

8 July 2018

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Genomic distribution and inter-sample variation of non-CpG methylation across human cell types

8 July 2018

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Uncovering the role of 5-hydroxymethylcytosine in the epigenome

8 July 2018

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In embryonic stem cells, ZFP57/KAP1 recognize a methylated hexanucleotide to affect chromatin and DNA methylation of imprinting control regions

8 July 2018

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Role of CpG context and content in evolutionary signatures of brain DNA methylation.

8 July 2018

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5-hmC-mediated epigenetic dynamics during postnatal neurodevelopment and aging

8 July 2018

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Temporal dynamics and genetic control of transcription in the human prefrontal cortex

8 July 2018

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Neuronal activity modifies the DNA methylation landscape in the adult brain

8 July 2018

1 reference

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Transcriptomic analysis of autistic brain reveals convergent molecular pathology

8 July 2018

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Epigenetic regulation of gene expression in physiological and pathological brain processes

8 July 2018

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Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.

8 July 2018

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Neurons show distinctive DNA methylation profile and higher interindividual variations compared with non-neurons

8 July 2018

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Mapping and analysis of chromatin state dynamics in nine human cell types

8 July 2018

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Balancing histone methylation activities in psychiatric disorders.

8 July 2018

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8 July 2018

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Replication timing-related and gene body-specific methylation of active human genes.

8 July 2018

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The UCSC Genome Browser database: update 2011

8 July 2018

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Dnmt3a regulates emotional behavior and spine plasticity in the nucleus accumbens

8 July 2018

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Neuropsychological assessment of the orbital and ventromedial prefrontal cortex

8 July 2018

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Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification

8 July 2018

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Divergence of human and mouse brain transcriptome highlights Alzheimer disease pathways

8 July 2018

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Tissue specific DNA methylation of CpG islands in normal human adult somatic tissues distinguishes neural from non-neural tissues.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874157

Abundant quantitative trait loci exist for DNA methylation and gene expression in human brain

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874157

Dnmt3b recruitment through E2F6 transcriptional repressor mediates germ-line gene silencing in murine somatic tissues

8 July 2018

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Widespread transcription at neuronal activity-regulated enhancers

8 July 2018

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Dnmt1 and Dnmt3a maintain DNA methylation and regulate synaptic function in adult forebrain neurons.

8 July 2018

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Genetic control of individual differences in gene-specific methylation in human brain.

8 July 2018

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Epigenetic mechanisms in neurological diseases: genes, syndromes, and therapies

8 July 2018

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Human DNA methylomes at base resolution show widespread epigenomic differences

8 July 2018

1 reference

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Editing of serotonin 2C receptor mRNA in the prefrontal cortex characterizes high-novelty locomotor response behavioral trait.

8 July 2018

1 reference

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CpG islands--'a rough guide'.

8 July 2018

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The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain

8 July 2018

1 reference

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Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells

8 July 2018

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Histone modifications at human enhancers reflect global cell-type-specific gene expression

8 July 2018

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The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

8 July 2018

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8 July 2018

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Distinct functions of egr gene family members in cognitive processes

8 July 2018

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8 July 2018

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Identification and characterization of novel human tissue-specific RFX transcription factors

8 July 2018

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Genome-scale DNA methylation maps of pluripotent and differentiated cells

8 July 2018

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Signaling mechanisms linking neuronal activity to gene expression and plasticity of the nervous system

8 July 2018

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Isolation of neuronal chromatin from brain tissue

8 July 2018

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Neurobehavioral mechanisms of impulsivity: fronto-striatal systems and functional neurochemistry

8 July 2018

1 reference

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Opioid neuropeptide genotypes in relation to heroin abuse: dopamine tone contributes to reversed mesolimbic proenkephalin expression

8 July 2018

1 reference

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A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function

8 July 2018

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Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R.

8 July 2018

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DNA methylation signatures within the human brain

8 July 2018

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PLINK: a tool set for whole-genome association and population-based linkage analyses

8 July 2018

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Definition of the orbital cortex in relation to specific connections with limbic and visceral structures and other cortical regions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874157

A chromatin landmark and transcription initiation at most promoters in human cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874157

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

8 July 2018

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The landscape of histone modifications across 1% of the human genome in five human cell lines

8 July 2018

1 reference

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Stability and flexibility of epigenetic gene regulation in mammalian development

8 July 2018

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Hyperconserved CpG domains underlie Polycomb-binding sites

8 July 2018

1 reference

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Gene body-specific methylation on the active X chromosome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874157

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874157

Population structure and eigenanalysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874157

Genome-wide atlas of gene expression in the adult mouse brain

8 July 2018

1 reference

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Analysis of oncogenic signaling networks in glioblastoma identifies ASPM as a molecular target

8 July 2018

1 reference

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SoxD proteins influence multiple stages of oligodendrocyte development and modulate SoxE protein function

8 July 2018

1 reference

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Principal components analysis corrects for stratification in genome-wide association studies

8 July 2018

1 reference

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Mu opioid receptor A118G polymorphism in association with striatal opioid neuropeptide gene expression in heroin abusers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874157

A general framework for weighted gene co-expression network analysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874157

A genome-wide analysis of CpG dinucleotides in the human genome distinguishes two distinct classes of promoters

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874157

The UCSC Genome Browser Database: update 2006

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874157

Molecular taxonomy of major neuronal classes in the adult mouse forebrain

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874157

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874157

WebLogo: A Sequence Logo Generator

8 July 2018

1 reference

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MethPrimer: designing primers for methylation PCRs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874157

DNA methylation patterns and epigenetic memory

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874157

Epigenetic reprogramming in mammalian development

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874157

CpG islands in vertebrate genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874157

DNA methylation is a critical cell-intrinsic determinant of astrocyte differentiation in the fetal brain.

8 July 2018

1 reference

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Orbitofrontal correlates of aggression and impulsivity in psychiatric patients

21 January 2018

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Dissociable mechanisms of cognitive control in prefrontal and premotor cortex.

21 January 2018

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High density DNA methylation array with single CpG site resolution

21 January 2018

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FANTOM4 EdgeExpressDB: an integrated database of promoters, genes, microRNAs, expression dynamics and regulatory interactions

21 January 2018

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Targets and dynamics of promoter DNA methylation during early mouse development.

21 January 2018

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The organization of the transcriptional network in specific neuronal classes.

21 January 2018

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A CaMKII-NeuroD signaling pathway specifies dendritic morphogenesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT838

An integrated encyclopedia of DNA elements in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT838

The CpG island shore of the GLT-1 gene acts as a methylation-sensitive enhancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT838

Neuronal cell-type specific DNA methylation patterns of the Cacna1c gene

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT838

Dynamic expression of de novo DNA methyltransferases Dnmt3a and Dnmt3b in the central nervous system

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT838

Distribution of 5-hydroxymethylcytosine in different human tissues

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKT838

DNA-binding factors shape the mouse methylome at distal regulatory regions

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874157

Overlapping probabilities of top ranking gene lists, hypergeometric distribution, and stringency of gene selection criterion.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3874157

Molecular biology. Epigenetic islands in a genetic ocean

26 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24057217

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Flow cytometric sorting of neuronal and glial nuclei from central nervous system tissue

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24057217

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKT838

1 reference

5 August 2017

1 reference

5 August 2017

1 reference