(Q35000863)

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Transcriptome sequencing and differential gene expression analysis of delayed gland morphogenesis in Gossypium australe during seed germination

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scholarly article

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Europe PubMed Central

5 August 2017

Transcriptome sequencing and differential gene expression analysis of delayed gland morphogenesis in Gossypium australe during seed germination (English)

1 reference

Europe PubMed Central

5 August 2017

1 reference

based on heuristic

inferred from title

seed germination

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based on heuristic

inferred from title

Gossypium australe

object named as

Gossypium australe

1 reference

based on heuristic

inferred from title

3

1 reference

Europe PubMed Central

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31 May 2020

author name string

Tao Tao

1

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31 May 2020

Liang Zhao

2

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31 May 2020

Jiedan Chen

4

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31 May 2020

Yan Hu

5

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31 May 2020

Tianzhen Zhang

6

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31 May 2020

Baoliang Zhou

7

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31 May 2020

language of work or name

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publication date

20 September 2013

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Europe PubMed Central

5 August 2017

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Europe PubMed Central

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31 May 2020

8

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Europe PubMed Central

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31 May 2020

9

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Europe PubMed Central

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31 May 2020

e75323

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31 May 2020

copyright license

Creative Commons Attribution 4.0 International

20 September 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

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describes a project that uses

object named as

edgeR

edgeR package

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Streaming fragment assignment for real-time analysis of sequencing experiments

1 reference

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8 July 2018

The draft genome of a diploid cotton Gossypium raimondii

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

The tomato genome sequence provides insights into fleshy fruit evolution

1 reference

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Fast gapped-read alignment with Bowtie 2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

Next-generation transcriptome assembly

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

Genome sequence and analysis of the tuber crop potato

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

Computational methods for transcriptome annotation and quantification using RNA-seq

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

HMMER web server: interactive sequence similarity searching

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

Full-length transcriptome assembly from RNA-Seq data without a reference genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

The family of terpene synthases in plants: a mid-size family of genes for specialized metabolism that is highly diversified throughout the kingdom

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

Fast identification and removal of sequence contamination from genomic and metagenomic datasets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

The Sequence Alignment/Map format and SAMtools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

RNA-Seq: a revolutionary tool for transcriptomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

Mapping and quantifying mammalian transcriptomes by RNA-Seq

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

Construction of cDNA library of cotton mutant Xiangmian-18 library during gland forming stage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

The function of terpene natural products in the natural world

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

KAAS: an automatic genome annotation and pathway reconstruction server

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

Characteristics, development and mapping of Gossypium hirsutum derived EST-SSRs in allotetraploid cotton

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

Java Treeview--extensible visualization of microarray data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

The Gene Ontology (GO) database and informatics resource

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

The Pfam protein families database

1 reference

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8 July 2018

TM4: a free, open-source system for microarray data management and analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

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EMBOSS: the European Molecular Biology Open Software Suite

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

Coordinated accumulation of (+)-delta-cadinene synthase mRNAs and gossypol in developing seeds of Gossypium hirsutum and a new member of the cad1 family from G. arboreum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

Cluster analysis and display of genome-wide expression patterns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

Cytotoxicity of gossypol enantiomers and its quinone metabolite gossypolone in melanoma cell lines.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

Cloning and heterologous expression of a second (+)-delta-cadinene synthase from Gossypium arboreum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

Purification of (+)-delta-cadinene synthase, a sesquiterpene cyclase from bacteria-inoculated cotton foliar tissue

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

Cloning, expression, and characterization of (+)-delta-cadinene synthase: a catalyst for cotton phytoalexin biosynthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

8 July 2018

Gossypol, a pigment of cottonseed.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0075323

21 January 2018

A revision of the Australian species of Gossypium with observations on the occurrence of Thespesia in Australia (Malvaceae)

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0075323

21 January 2018

Reduced levels of cadinane sesquiterpenoids in cotton plants expressing antisense (+)-delta-cadinene synthase

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0075323

21 January 2018

Antisense suppression of a (+)-delta-cadinene synthase gene in cotton prevents the induction of this defense response gene during bacterial blight infection but not its constitutive expression.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0075323

21 January 2018

Molecular cloning and functional identification of (+)-delta-cadinene-8-hydroxylase, a cytochrome P450 mono-oxygenase (CYP706B1) of cotton sesquiterpene biosynthesis

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0075323

21 January 2018

Characterization of GaWRKY1, a cotton transcription factor that regulates the sesquiterpene synthase gene (+)-delta-cadinene synthase-A.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0075323

21 January 2018

Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0075323

21 January 2018

Associative transcriptomics of traits in the polyploid crop species Brassica napus.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0075323

21 January 2018

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0075323

21 January 2018

Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium).

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0075323

21 January 2018

The peroxidative coupling of hemigossypol to (+)- and (-)-gossypol in cottonseed extracts

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0075323

21 January 2018

Arabidopsis MYC2 interacts with DELLA proteins in regulating sesquiterpene synthase gene expression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3779162

26 October 2018

Biosynthesis of Gossypol by Excised Cotton Roots

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0075323

21 January 2018

Identifiers

10.1371/JOURNAL.PONE.0075323

1 reference

Europe PubMed Central

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31 May 2020

2013PLoSO...875323T

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1 reference

Europe PubMed Central

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31 May 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24073262%20AND%20SRC:MED&resulttype=core&format=json

31 May 2020

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