(Q35003305)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19758566%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

title

A hierarchy of H3K4me3 and H3K27me3 acquisition in spatial gene regulation in Xenopus embryos (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19758566%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

0 references

Simon J van Heeringen

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19758566%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

Gert Jan C Veenstra

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19758566%20AND%20SRC:MED&resulttype=core&format=json

Hendrik Gerard Stunnenberg

7 February 2020

6

object named as

Hendrik G Stunnenberg

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19758566%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

author name string

Robert C Akkers

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19758566%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

Ulrike G Jacobi

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19758566%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

Eva M Janssen-Megens

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19758566%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

Kees-Jan Françoijs

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19758566%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

language of work or name

English

0 references

publication date

1 September 2009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19758566%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

number of pages

10

1 reference

based on heuristic

inferred from page(s)

published in

Developmental Cell

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19758566%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

volume

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19758566%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

issue

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19758566%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

page(s)

425-434

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19758566%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

7 February 2020

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/2746918

based on heuristic

inferred from PubMed Central ID database lookup

cites work

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8 July 2018

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Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation

8 July 2018

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Analysis of histones in Xenopus laevis. I. A distinct index of enriched variants and modifications exists in each cell type and is remodeled during developmental transitions

8 July 2018

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Analysis of histones in Xenopus laevis. II. mass spectrometry reveals an index of cell type-specific modifications on H3 and H4.

8 July 2018

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8 July 2018

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Coordinated regulation of transcriptional repression by the RBP2 H3K4 demethylase and Polycomb-Repressive Complex 2

8 July 2018

1 reference

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Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells

8 July 2018

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Lrig3 regulates neural crest formation in Xenopus by modulating Fgf and Wnt signaling pathways

8 July 2018

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WGEF activates Rho in the Wnt-PCP pathway and controls convergent extension in Xenopus gastrulation

8 July 2018

1 reference

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Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing

8 July 2018

1 reference

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How chromatin-binding modules interpret histone modifications: lessons from professional pocket pickers

8 July 2018

1 reference

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Covalent modifications of histones during development and disease pathogenesis

8 July 2018

1 reference

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Xenbase: a Xenopus biology and genomics resource

8 July 2018

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Selective anchoring of TFIID to nucleosomes by trimethylation of histone H3 lysine 4

8 July 2018

1 reference

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Improved detection of overrepresentation of Gene-Ontology annotations with parent child analysis

8 July 2018

1 reference

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Demethylation of H3K27 regulates polycomb recruitment and H2A ubiquitination

8 July 2018

1 reference

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A chromatin landmark and transcription initiation at most promoters in human cells

8 July 2018

1 reference

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Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

8 July 2018

1 reference

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High-resolution profiling of histone methylations in the human genome

8 July 2018

1 reference

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Genome regulation by polycomb and trithorax proteins

8 July 2018

1 reference

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Histone trimethylation and the maintenance of transcriptional ON and OFF states by trxG and PcG proteins

8 July 2018

1 reference

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Resources for genetic and genomic studies of Xenopus

8 July 2018

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A PHD finger of NURF couples histone H3 lysine 4 trimethylation with chromatin remodelling

8 July 2018

1 reference

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A bivalent chromatin structure marks key developmental genes in embryonic stem cells

8 July 2018

1 reference

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Polycomb complexes repress developmental regulators in murine embryonic stem cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

Chromatin signatures of pluripotent cell lines

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

WDR5 associates with histone H3 methylated at K4 and is essential for H3 K4 methylation and vertebrate development

8 July 2018

1 reference

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Bioconductor: open software development for computational biology and bioinformatics

8 July 2018

1 reference

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Specialized and redundant roles of TBP and a vertebrate-specific TBP paralog in embryonic gene regulation in Xenopus

8 July 2018

1 reference

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Defining a large set of full-length clones from a Xenopus tropicalis EST project

8 July 2018

1 reference

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Partitioning and plasticity of repressive histone methylation states in mammalian chromatin

8 July 2018

1 reference

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Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative

8 July 2018

1 reference

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Active genes are tri-methylated at K4 of histone H3

8 July 2018

1 reference

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Role of histone H3 lysine 27 methylation in Polycomb-group silencing

8 July 2018

1 reference

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BLAT—The BLAST-Like Alignment Tool

8 July 2018

1 reference

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DNA methylation at promoter regions regulates the timing of gene activation in Xenopus laevis embryos

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

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8 July 2018

1 reference

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The polycomb group protein EED interacts with YY1, and both proteins induce neural tissue in Xenopus embryos

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

Transient depletion of xDnmt1 leads to premature gene activation in Xenopus embryos

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

The language of covalent histone modifications

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

Translation of maternal TATA-binding protein mRNA potentiates basal but not activated transcription in Xenopus embryos at the midblastula transition.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

Transcriptional repression by XPc1, a new Polycomb homolog in Xenopus laevis embryos, is independent of histone deacetylase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

The Xenopus Brachyury promoter is activated by FGF and low concentrations of activin and suppressed by high concentrations of activin and by paired-type homeodomain proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

Somatic linker histones cause loss of mesodermal competence in Xenopus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

Xenopus VegT RNA is localized to the vegetal cortex during oogenesis and encodes a novel T-box transcription factor involved in mesodermal patterning

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

Chromatin transitions during early Xenopus embryogenesis: changes in histone H4 acetylation and in linker histone type.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

Competition between chromatin and transcription complex assembly regulates gene expression during early development

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

Specific regulation of Xenopus chromosomal 5S rRNA gene transcription in vivo by histone H1.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

Trithorax regulates multiple homeotic genes in the bithorax and Antennapedia complexes and exerts different tissue-specific, parasegment-specific and promoter-specific effects on each.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

Constraints on transcriptional activator function contribute to transcriptional quiescence during early Xenopus embryogenesis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

A major developmental transition in early Xenopus embryos: II. Control of the onset of transcription

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

A major developmental transition in early xenopus embryos: I. characterization and timing of cellular changes at the midblastula stage

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

Expression of a histone H1-like protein is restricted to early Xenopus development

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

Dominant and specific repression of Xenopus oocyte 5S RNA genes and satellite I DNA by histone H1.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

xDnmt1 regulates transcriptional silencing in pre-MBT Xenopus embryos independently of its catalytic function

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

Functional specificity of the Xenopus T-domain protein Brachyury is conferred by its ability to interact with Smad1.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

Establishment of mesodermal gene expression patterns in early Xenopus embryos: the role of repression

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

Zygotic Wnt activity is required for Brachyury expression in the early Xenopus laevis embryo

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

VegT activation of Sox17 at the midblastula transition alters the response to nodal signals in the vegetal endoderm domain

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

Region-specific activation of the Xenopus brachyury promoter involves active repression in ectoderm and endoderm: a study using transgenic frog embryos.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cells

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2746918

10.1016/J.DEVCEL.2009.08.005

9 December 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19758566%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19758566%20AND%20SRC:MED&resulttype=core&format=json

7 February 2020

PubMed publication ID

19758566

1 reference