(Q35003595)

5 August 2017

Clustering heterochromatin: Sir3 promotes telomere clustering independently of silencing in yeast (English)

1 reference

5 August 2017

Myriam Ruault

1

1 reference

5 August 2017

Arnaud De Meyer

series ordinal

2

1 reference

5 August 2017

Isabelle Loïodice

series ordinal

3

1 reference

5 August 2017

Angela Taddei

series ordinal

4

1 reference

5 August 2017

language of work or name

English

0 references

publication date

1 February 2011

1 reference

5 August 2017

15

1 reference

inferred from page(s)

published in

Journal of Cell Biology

1 reference

5 August 2017

192

1 reference

5 August 2017

3

1 reference

5 August 2017

417-431

1 reference

describes a project that uses

5 August 2017

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3101097/fullTextXML

inferred from PubMed Central ID database lookup

cites work

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Chromosome arm length and nuclear constraints determine the dynamic relationship of yeast subtelomeres

8 July 2018

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Reconstitution of heterochromatin-dependent transcriptional gene silencing

8 July 2018

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Yeast silent mating type loci form heterochromatic clusters through silencer protein-dependent long-range interactions

8 July 2018

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Yeast telomerase and the SUN domain protein Mps3 anchor telomeres and repress subtelomeric recombination

8 July 2018

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Nuclear neighborhoods and gene expression

8 July 2018

1 reference

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Reconstitution of yeast silent chromatin: multiple contact sites and O-AADPR binding load SIR complexes onto nucleosomes in vitro

8 July 2018

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The functional importance of telomere clustering: global changes in gene expression result from SIR factor dispersion

8 July 2018

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Role of nucleic acid binding in Sir3p-dependent interactions with chromatin fibers

8 July 2018

1 reference

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Sir3-nucleosome interactions in spreading of silent chromatin in Saccharomyces cerevisiae

8 July 2018

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Antigenic variation in Plasmodium falciparum

8 July 2018

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The silent information regulator 3 protein, SIR3p, binds to chromatin fibers and assembles a hypercondensed chromatin architecture in the presence of salt

8 July 2018

1 reference

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Controlled exchange of chromosomal arms reveals principles driving telomere interactions in yeast

8 July 2018

1 reference

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Telomere anchoring at the nuclear periphery requires the budding yeast Sad1-UNC-84 domain protein Mps3.

8 July 2018

1 reference

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Telomeric position effect: from the yeast paradigm to human pathologies?

8 July 2018

1 reference

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The nuclear envelope and transcriptional control.

8 July 2018

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The ins and outs of gene regulation and chromosome territory organisation

8 July 2018

1 reference

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Long-range DNA contacts: romance in the nucleus?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Gaussian approximations of fluorescence microscope point-spread function models

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Beyond the sequence: cellular organization of genome function

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Sir3 C-terminal domain involvement in the initiation and spreading of heterochromatin.

8 July 2018

1 reference

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Domain structure and protein interactions of the silent information regulator Sir3 revealed by screening a nested deletion library of protein fragments

8 July 2018

1 reference

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Structure and function of the Saccharomyces cerevisiae Sir3 BAH domain

8 July 2018

1 reference

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Heterochromatin formation involves changes in histone modifications over multiple cell generations

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Spontaneous rDNA copy number variation modulates Sir2 levels and epigenetic gene silencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Chromosome looping in yeast: telomere pairing and coordinated movement reflect anchoring efficiency and territorial organization

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Dependence of ORC silencing function on NatA-mediated Nalpha acetylation in Saccharomyces cerevisiae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Importance of the Sir3 N terminus and its acetylation for yeast transcriptional silencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

A versatile toolbox for PCR-based tagging of yeast genes: new fluorescent proteins, more markers and promoter substitution cassettes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Mouse centric and pericentric satellite repeats form distinct functional heterochromatin

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

A model for step-wise assembly of heterochromatin in yeast.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Separation of silencing from perinuclear anchoring functions in yeast Ku80, Sir4 and Esc1 proteins.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

The Ku Heterodimer Performs Separable Activities at Double-Strand Breaks and Chromosome Termini

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Global analysis of protein expression in yeast

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Separation-of-function mutants of yeast Ku80 reveal a Yku80p-Sir4p interaction involved in telomeric silencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

The establishment, inheritance, and function of silenced chromatin in Saccharomyces cerevisiae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Esc1, a nuclear periphery protein required for Sir4-based plasmid anchoring and partitioning

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Structure and function of the BAH-containing domain of Orc1p in epigenetic silencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Rap1-Sir4 binding independent of other Sir, yKu, or histone interactions initiates the assembly of telomeric heterochromatin in yeast

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Steps in assembly of silent chromatin in yeast: Sir3-independent binding of a Sir2/Sir4 complex to silencers and role for Sir2-dependent deacetylation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Sir3-dependent assembly of supramolecular chromatin structures in vitro

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Visualizing chromosome dynamics with GFP.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Analysis of Sir2p domains required for rDNA and telomeric silencing in Saccharomyces cerevisiae.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Relocalization of telomeric Ku and SIR proteins in response to DNA strand breaks in yeast

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

MEC1-dependent redistribution of the Sir3 silencing protein from telomeres to DNA double-strand breaks

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Limitations of silencing at native yeast telomeres

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Mating-type gene switching in Saccharomyces cerevisiae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Functional characterization of the N terminus of Sir3p

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Distribution of a limited Sir2 protein pool regulates the strength of yeast rDNA silencing and is modulated by Sir4p

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Localization of Sir2p: the nucleolus as a compartment for silent information regulators

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

A novel Rap1p-interacting factor, Rif2p, cooperates with Rif1p to regulate telomere length in Saccharomyces cerevisiae.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Hyperactivation of the silencing proteins, Sir2p and Sir3p, causes chromosome loss

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Histone acetylation: a possible mechanism for the inheritance of cell memory at mitosis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

SIR2 and SIR4 interactions differ in core and extended telomeric heterochromatin in yeast

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Activation of an MAP kinase cascade leads to Sir3p hyperphosphorylation and strengthens transcriptional silencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

The clustering of telomeres and colocalization with Rap1, Sir3, and Sir4 proteins in wild-type Saccharomyces cerevisiae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Spreading of transcriptional repressor SIR3 from telomeric heterochromatin

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Evidence that a complex of SIR proteins interacts with the silencer and telomere-binding protein RAP1.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Mutational analysis defines a C-terminal tail domain of RAP1 essential for Telomeric silencing in Saccharomyces cerevisiae.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Regulatable promoters of Saccharomyces cerevisiae: comparison of transcriptional activity and their use for heterologous expression

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

The carboxy termini of Sir4 and Rap1 affect Sir3 localization: evidence for a multicomponent complex required for yeast telomeric silencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

A complete set of marked telomeres in Saccharomyces cerevisiae for physical mapping and cloning

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

DNA sequences of telomeres maintained in yeast

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Functional domains of SIR4, a gene required for position effect regulation in Saccharomyces cerevisiae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Purification and cloning of a DNA binding protein from yeast that binds to both silencer and activator elements

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

A new role for a yeast transcriptional silencer gene, SIR2, in regulation of recombination in ribosomal DNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Elevated recombination rates in transcriptionally active DNA

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Position effect at S. cerevisiae telomeres: reversible repression of Pol II transcription

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Modifiers of position effect are shared between telomeric and silent mating-type loci in S. cerevisiae.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3101097

Regulation of subtelomeric silencing during stress response.

8 July 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.201008007

Perinuclear localization of chromatin facilitates transcriptional silencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.201008007

High-resolution statistical mapping reveals gene territories in live yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.201008007

Histone H3 lysine 4 trimethylation marks meiotic recombination initiation sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.201008007

Low auxotrophy-complementing amino acid concentrations reduce yeast chronological life span.

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.201008007

Meiotic behaviours of chromosomes and microtubules in budding yeast: relocalization of centromeres and telomeres during meiotic prophase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.201008007

Methods for visualizing chromatin dynamics in living yeast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.201008007

Mutation of yeast Ku genes disrupts the subnuclear organization of telomeres.

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.201008007

Assembly of the SIR complex and its regulation by O-acetyl-ADP-ribose, a product of NAD-dependent histone deacetylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.201008007

Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.201008007

A deubiquitinating enzyme interacts with SIR4 and regulates silencing in S. cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.201008007

HIF1A signaling selectively supports proliferation of breast cancer in the brain

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.201008007

Mutational analysis of the Sir3 BAH domain reveals multiple points of interaction with nucleosomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.201008007

Automatic fluorescent tag detection in 3D with super-resolution: application to the analysis of chromosome movement.

21 January 2018

1 reference

https://api.crossref.org/works/10.1083%2FJCB.201008007

Silencing factors participate in DNA repair and recombination in Saccharomyces cerevisiae

21 January 2018

2 references

https://api.crossref.org/works/10.1083%2FJCB.201008007

21 January 2018

12 December 2020

Analysis of nuclear organization in Saccharomyces cerevisiae

1 reference

12 December 2020

Sir-mediated repression can occur independently of chromosomal and subnuclear contexts

1 reference

12 December 2020

Role of the conserved Sir3-BAH domain in nucleosome binding and silent chromatin assembly

1 reference

12 December 2020

Silent domains are assembled continuously from the telomere and are defined by promoter distance and strength, and by SIR3 dosage

1 reference

12 December 2020

Action of a RAP1 carboxy-terminal silencing domain reveals an underlying competition between HMR and telomeres in yeast

1 reference

12 December 2020

Silencing of genes at nontelomeric sites in yeast is controlled by sequestration of silencing factors at telomeres by Rap 1 protein

1 reference

12 December 2020

Evidence for silencing compartments within the yeast nucleus: a role for telomere proximity and Sir protein concentration in silencer-mediated repression

1 reference

12 December 2020

Identifiers

DOI

10.1083/JCB.201008007

1 reference

release_davkgw2sm5czlofllbyzawtch4

5 August 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/davkgw2sm5czlofllbyzawtch4

24 November 2022

mapped directly with Wikidata item

0 references

1 reference

5 August 2017

1 reference