(Q35004875)

5 August 2017

title

An overview of the introns-first theory (English)

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5 August 2017

Daniel C Jeffares

4

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author name string

David Penny

series ordinal

1

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5 August 2017

Marc P Hoeppner

series ordinal

2

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5 August 2017

Anthony M Poole

series ordinal

3

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5 August 2017

publication date

24 September 2009

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Journal of Molecular Evolution

5 August 2017

published in

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5 August 2017

volume

69

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5 August 2017

issue

5

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5 August 2017

page(s)

527-540

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The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa

5 August 2017

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RNase MRP and the RNA processing cascade in the eukaryotic ancestor

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Computational screen for spliceosomal RNA genes aids in defining the phylogenetic distribution of major and minor spliceosomal components

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Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea

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RNA splicing and polynucleotide evolution

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Protecting exons from deleterious R-loops: a potential advantage of having introns

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A guided tour: small RNA function in Archaea

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Splicing in the eukaryotic ancestor: form, function and dysfunction

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Evolutionarily conserved genes preferentially accumulate introns

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On the possibility of constructive neutral evolution

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Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features

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Structure of a self-splicing group II intron catalytic effector domain 5: parallels with spliceosomal U6 RNA

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The rise of birds and mammals: are microevolutionary processes sufficient for macroevolution?

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Speculations on the early course of evolution

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Nucleomorph genome of Hemiselmis andersenii reveals complete intron loss and compaction as a driver of protein structure and function

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12 December 2020

Evaluating hypotheses for the origin of eukaryotes

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12 December 2020

Comparative genomics of phylogenetically diverse unicellular eukaryotes provide new insights into the genetic basis for the evolution of the programmed cell death machinery

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Widespread intron loss suggests retrotransposon activity in ancient apicomplexans

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Small non-coding RNAs in Archaea

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Archaeal homologs of eukaryotic methylation guide small nucleolar RNAs: lessons from the Pyrococcus genomes

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Evolutionary dynamics of transposable elements in prokaryotes and eukaryotes

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12 December 2020

Intron evolution as a population-genetic process

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Intronic noncoding RNAs and splicing.

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Getting from an RNA world to modern cells just got a little easier

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Ancestral RNA: the RNA biology of the eukaryotic ancestor

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The biology of intron gain and loss.

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Coevolution of genomic intron number and splice sites

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12 December 2020

Where do introns come from?

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12 December 2020

The RNA infrastructure: dark matter of the eukaryotic cell?

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12 December 2020

The origin of the eukaryotic cell: a genomic investigation

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12 December 2020

Characterization of intron loss events in mammals

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12 December 2020

Sm/Lsm genes provide a glimpse into the early evolution of the spliceosome

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12 December 2020

Computer simulation of chaperone effects of Archaeal C/D box sRNA binding on rRNA folding

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12 December 2020

Patterns and rates of intron divergence between humans and chimpanzees

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12 December 2020

The recent origins of spliceosomal introns revisited

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12 December 2020

Evolutionary diversification of the Sm family of RNA-associated proteins

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12 December 2020

Endogenous mechanisms for the origins of spliceosomal introns

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12 December 2020

Self-sustained replication of an RNA enzyme

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12 December 2020

Comparative analysis of ribosomal proteins in complete genomes: an example of reductive evolution at the domain scale

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A glimpse of a putative pre-intron phase of eukaryotic evolution

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Mystery of intron gain: new data and new models

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An early evolutionary origin for the minor spliceosome

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Conserved spacing between the box C/D and C'/D' RNPs of the archaeal box C/D sRNP complex is required for efficient 2'-O-methylation of target RNAs

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Mapping to nucleotide resolution of pseudouridine residues in large subunit ribosomal RNAs from representative eukaryotes, prokaryotes, archaebacteria, mitochondria and chloroplasts

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The origin of introns and their role in eukaryogenesis: a compromise solution to the introns-early versus introns-late debate?

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12 December 2020

The evolution of spliceosomal introns: patterns, puzzles and progress

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12 December 2020

Eukaryotic evolution, changes and challenges

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12 December 2020

mRNA splicing and autocatalytic introns: distant cousins or the products of chemical determinism?

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Introns: mighty elements from the RNA world

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12 December 2020

Bacterial genome size reduction by experimental evolution

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12 December 2020

The path from the RNA world.

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The exon theory of genes

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12 December 2020

RNase P without RNA: identification and functional reconstitution of the human mitochondrial tRNA processing enzyme

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The origin and evolution of tRNA inferred from phylogenetic analysis of structure

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The birth and death of microRNA genes in Drosophila

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12 December 2020

The origin of eukaryotes: a reappraisal.

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Crawling out of the RNA world

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12 December 2020

Formation of the 5' end pseudoknot in small subunit ribosomal RNA: involvement of U3-like sequences

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12 December 2020

Trans-activation of group II intron splicing by nuclear U5 snRNA.

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12 December 2020

A case for the extreme antiquity of recombination

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12 December 2020

Adaptations to energy stress dictate the ecology and evolution of the Archaea

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12 December 2020

U2–U6 RNA folding reveals a group II intron-like domain and a four-helix junction

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12 December 2020

Patterns of selective constraints in noncoding DNA of rice

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12 December 2020

Relics from the RNA World

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12 December 2020

The origin of modern terrestrial life

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12 December 2020

Guide RNAs with 5' caps and novel box C/D snoRNA-like domains for modification of snRNAs in metazoa

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12 December 2020

Relating alternative splicing to proteome complexity and genome evolution.

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12 December 2020

Protein-free small nuclear RNAs catalyze a two-step splicing reaction

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12 December 2020

Rapidly regulated genes are intron poor.

1 reference

12 December 2020

Selection for short introns in highly expressed genes

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12 December 2020

Homologs of small nucleolar RNAs in Archaea

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12 December 2020

Origin of introns by ‘intronization’ of exonic sequences

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12 December 2020

A hierarchical model for evolution of 23S ribosomal RNA.

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12 December 2020

Seven newly discovered intron positions in the triose-phosphate isomerase gene: evidence for the introns-late theory

1 reference

12 December 2020

Intron presence-absence polymorphisms in Daphnia

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12 December 2020

Genomics and the irreducible nature of eukaryote cells

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12 December 2020

Thermoreduction, a hypothesis for the origin of prokaryotes

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12 December 2020

Evolutionary origin and genomic organization of micro-RNA genes in immunoglobulin lambda variable region gene family

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12 December 2020

The split genes of Nanoarchaeum equitans are an ancestral character

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12 December 2020

Number, position, and significance of the pseudouridines in the large subunit ribosomal RNA of Haloarcula marismortui and Deinococcus radiodurans

1 reference

12 December 2020

Functional and evolutionary analysis of alternatively spliced genes is consistent with an early eukaryotic origin of alternative splicing

1 reference

12 December 2020

In plants, highly expressed genes are the least compact

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12 December 2020

Eukaryotic intron loss

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12 December 2020

Intron-mediated regulation of gene expression

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12 December 2020

Origins and evolution of spliceosomal introns

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12 December 2020

Early evolution: prokaryotes, the new kids on the block

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12 December 2020

Recombination in primeval genomes: a step forward but still a long leap from maintaining a sizable genome

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12 December 2020

The centrality of RNA.

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12 December 2020

Rfam: updates to the RNA families database

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12 December 2020

The structure of rat liver vault at 3.5 angstrom resolution

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12 December 2020

A high density of ancient spliceosomal introns in oxymonad excavates

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12 December 2020

Intron presence-absence polymorphism in Drosophila driven by positive Darwinian selection

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12 December 2020

Pre-mRNA splicing: awash in a sea of proteins

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12 December 2020

Intron-mediated RNA interference and microRNA biogenesis

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12 December 2020

Recurrent invasion and extinction of a selfish gene

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12 December 2020

Origins and Mechanisms of miRNAs and siRNAs

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12 December 2020

The modern RNP world of eukaryotes

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12 December 2020

The emergence of predators in early life: there was no Garden of Eden

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12 December 2020

Complex spliceosomal organization ancestral to extant eukaryotes

1 reference

12 December 2020

Alternative splicing: a missing piece in the puzzle of intron gain

1 reference

12 December 2020

10.1007/S00239-009-9279-5

Identifiers

DOI

1 reference

5 August 2017

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