(Q35009489)

5 August 2017

title

Improved detection of rare HIV-1 variants using 454 pyrosequencing (English)

1 reference

5 August 2017

1 reference

Lisa M Frenkel

9

0 references

James Mullins

10

object named as

James I Mullins

1 reference

5 August 2017

1

Brendan B Larsen

1 reference

5 August 2017

Lennie Chen

2

1 reference

5 August 2017

Brandon S Maust

3

1 reference

5 August 2017

Moon Kim

4

1 reference

5 August 2017

Hong Zhao

5

1 reference

5 August 2017

Wenjie Deng

6

1 reference

5 August 2017

Dylan Westfall

7

1 reference

5 August 2017

Ingrid Beck

8

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5 August 2017

language of work or name

English

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publication date

2 October 2013

1 reference

5 August 2017

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5 August 2017

volume

8

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5 August 2017

issue

10

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5 August 2017

page(s)

e76502

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Creative Commons Attribution 4.0 International

5 August 2017

copyright license

start time

2 October 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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8 July 2018

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8 July 2018

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Highly sensitive and specific detection of rare variants in mixed viral populations from massively parallel sequence data

8 July 2018

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Experimental analysis of sources of error in evolutionary studies based on Roche/454 pyrosequencing of viral genomes

8 July 2018

1 reference

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Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection

8 July 2018

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Virologic failures on initial boosted-PI regimen infrequently possess low-level variants with major PI resistance mutations by ultra-deep sequencing

8 July 2018

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Prevalence and impact of minority variant drug resistance mutations in primary HIV-1 infection

8 July 2018

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8 July 2018

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Accurate sampling and deep sequencing of the HIV-1 protease gene using a Primer ID

8 July 2018

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8 July 2018

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Deep molecular characterization of HIV-1 dynamics under suppressive HAART

8 July 2018

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pcrEfficiency: a Web tool for PCR amplification efficiency prediction

8 July 2018

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Inferring viral quasispecies spectra from 454 pyrosequencing reads.

8 July 2018

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Identification of HIV superinfection in seroconcordant couples in Rakai, Uganda, by use of next-generation deep sequencing

8 July 2018

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Detection of minority resistance during early HIV-1 infection: natural variation and spurious detection rather than transmission and evolution of multiple viral variants.

8 July 2018

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8 July 2018

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ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data

8 July 2018

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Viral linkage in HIV-1 seroconverters and their partners in an HIV-1 prevention clinical trial

8 July 2018

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Genetic impact of vaccination on breakthrough HIV-1 sequences from the STEP trial

8 July 2018

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Whole-genome characterization of human and simian immunodeficiency virus intrahost diversity by ultradeep pyrosequencing

8 July 2018

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Transmission of single HIV-1 genomes and dynamics of early immune escape revealed by ultra-deep sequencing

8 July 2018

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Dynamics of HIV-1 quasispecies during antiviral treatment dissected using ultra-deep pyrosequencing

8 July 2018

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Nucleic acid template and the risk of a PCR-Induced HIV-1 drug resistance mutation

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3788733

Mathematical modeling of ultradeep sequencing data reveals that acute CD8+ T-lymphocyte responses exert strong selective pressure in simian immunodeficiency virus-infected macaques but still fail to clear founder epitope sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3788733

Pre-existing minority drug-resistant HIV-1 variants, adherence, and risk of antiretroviral treatment failure

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3788733

Accurate determination of microbial diversity from 454 pyrosequencing data

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3788733

Ultradeep pyrosequencing detects complex patterns of CD8+ T-lymphocyte escape in simian immunodeficiency virus-infected macaques

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3788733

Efficacy assessment of a cell-mediated immunity HIV-1 vaccine (the Step Study): a double-blind, randomised, placebo-controlled, test-of-concept trial

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3788733

Minority HIV-1 drug resistance mutations are present in antiretroviral treatment-naïve populations and associate with reduced treatment efficacy

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3788733

New real-time reverse transcriptase-initiated PCR assay with single-copy sensitivity for human immunodeficiency virus type 1 RNA in plasma

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3788733

Rapid and simple PCR assay for quantitation of human immunodeficiency virus type 1 RNA in plasma: application to acute retroviral infection.

8 July 2018

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8 July 2018

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8 July 2018

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The accuracy of reverse transcriptase from HIV-1.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3788733

Basic local alignment search tool

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3788733

Quantitation of target molecules from polymerase chain reaction-based limiting dilution assays.

8 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0076502

Minor variant detection in amplicons using 454 massive parallel pyrosequencing: experiences and considerations for successful applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0076502

Prevalence of minor variants of HIV strains at reverse transcriptase position 103 in therapy-naïve patients and their impact on the virological failure

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0076502

Low-frequency K103N strengthens the impact of transmitted drug resistance on virologic responses to first-line efavirenz or nevirapine-based highly active antiretroviral therapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0076502

Minority quasispecies of drug-resistant HIV-1 that lead to early therapy failure in treatment-naive and -adherent patients

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0076502

Low-abundance drug-resistant viral variants in chronically HIV-infected, antiretroviral treatment-naive patients significantly impact treatment outcomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0076502

Efficient suppression of minority drug-resistant HIV type 1 (HIV-1) variants present at primary HIV-1 infection by ritonavir-boosted protease inhibitor-containing antiretroviral therapy

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0076502

Transmission of HIV-1 minority-resistant variants and response to first-line antiretroviral therapy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0076502

HIV Quasispecies and Resampling

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0076502

Clinical and epidemiologic features of primary HIV infection

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24098517

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Transmission of HIV‐1 Drug‐Resistant Variants: Prevalence and Effect on Treatment Outcome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24098517

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0076502

1 reference

5 August 2017

0 references

1 reference

5 August 2017

1 reference