(Q35013099)

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Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56,419 completely sequenced and manually annotated full-length cDNAs

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Europe PubMed Central

PubMed publication ID

5 August 2017

Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56,419 completely sequenced and manually annotated full-length cDNAs (English)

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Europe PubMed Central

PubMed publication ID

5 August 2017

alternative mRNA splicing, via spliceosome

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based on heuristic

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Danielle Thierry-Mieg

17

object named as

Danielle Thierry-Mieg

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Masafumi Shionyu

object named as

Masafumi Shionyu

13

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Kanako O Koyanagi

object named as

Kanako O Koyanagi

5

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Jean Thierry-Mieg

object named as

Jean Thierry-Mieg

16

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Tadashi Imanishi

object named as

Tadashi Imanishi

22

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object named as

Stefan Wiemann

18

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Takashi Gojobori

21

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Takashi Gojobori

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5 August 2017

object named as

Kei Yura

14

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20

object named as

Sumio Sugano

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5 August 2017

2

object named as

Yutaka Suzuki

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5 August 2017

11

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Tetsuji Otsuki

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5 August 2017

10

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Keiichi Nagai

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5 August 2017

9

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Takao Isogai

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5 August 2017

Hiroko Kozuka-Hata

8

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Hiroko Hata

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5 August 2017

Jun-ichi Takeda

1

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Jun-ichi Takeda

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5 August 2017

Mitsuteru Nakao

3

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Mitsuteru Nakao

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5 August 2017

author name string

Roberto A Barrero

4

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5 August 2017

Lihua Jin

6

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5 August 2017

Chie Motono

7

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5 August 2017

Vladimir Kuryshev

12

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5 August 2017

Mitiko Go

15

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5 August 2017

Nobuo Nomura

19

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5 August 2017

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publication date

12 August 2006

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5 August 2017

number of pages

12

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Nucleic Acids Research

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5 August 2017

34

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5 August 2017

14

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5 August 2017

3917-3928

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5 August 2017

ASD: a bioinformatics resource on alternative splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Transcription-mediated gene fusion in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Splicing of a rare class of introns by the U12-dependent spliceosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

The transcriptional landscape of the mammalian genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Alternative pre-mRNA processing regulates cell-type specific expression of the IL4l1 and NUP62 genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

A high-resolution map of active promoters in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Mechanistic links between nonsense-mediated mRNA decay and pre-mRNA splicing in mammalian cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Large-scale analysis of human alternative protein isoforms: pattern classification and correlation with subcellular localization signals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Identification and analysis of alternative splicing events conserved in human and mouse

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Analysis of small human proteins reveals the translation of upstream open reading frames of mRNAs

1 reference

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8 July 2018

Generation of recognition diversity in the nervous system

1 reference

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8 July 2018

Alternative splicing of Drosophila Dscam generates axon guidance receptors that exhibit isoform-specific homophilic binding

1 reference

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8 July 2018

RESCUE-ESE identifies candidate exonic splicing enhancers in vertebrate exons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

The multiassembly problem: reconstructing multiple transcript isoforms from EST fragment mixtures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Complete sequencing and characterization of 21,243 full-length human cDNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Complex controls: the role of alternative promoters in mammalian genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

The birth of an alternatively spliced exon: 3' splice-site selection in Alu exons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

ASAP: the Alternative Splicing Annotation Project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Finding signals that regulate alternative splicing in the post-genomic era

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Inferring alternative splicing patterns in mouse from a full-length cDNA library and microarray data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Predictive identification of exonic splicing enhancers in human genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

A genomic view of alternative splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

The contribution of exon-skipping events on chromosome 22 to protein coding diversity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Genome-wide detection of alternative splicing in expressed sequences of human genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Initial sequencing and analysis of the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Toward a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Analysis of canonical and non-canonical splice sites in mammalian genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Alternative pre-mRNA splicing: the logic of combinatorial control

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

IKKepsilon is part of a novel PMA-inducible IkappaB kinase complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Analysis of expressed sequence tags indicates 35,000 human genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

How NF-kappaB is activated: the role of the IkappaB kinase (IKK) complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Identification of a candidate modifying gene for spinal muscular atrophy by comparative genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Huntingtin interacts with a family of WW domain proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Cotranscription and intergenic splicing of human galactose-1-phosphate uridylyltransferase and interleukin-11 receptor alpha-chain genes generate a fusion mRNA in normal cells. Implication for the production of multidomain proteins during evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

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Base-calling of automated sequencer traces using phred. I. Accuracy assessment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Why genes in pieces?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

8 July 2018

Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1557807

25 October 2018

Alternative splicing of pre-mRNA: developmental consequences and mechanisms of regulation.

1 reference

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25 October 2018

ISIS, the intron information system, reveals the high frequency of alternative splicing in the human genome

1 reference

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9 December 2018

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10.1093/NAR/GKL507

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Europe PubMed Central

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5 August 2017

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