(Q35020044)

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Selective ribosome profiling as a tool for studying the interaction of chaperones and targeting factors with nascent polypeptide chains and ribosomes

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Europe PubMed Central

PubMed publication ID

5 August 2017

Selective ribosome profiling as a tool for studying the interaction of chaperones and targeting factors with nascent polypeptide chains and ribosomes (English)

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

molecular chaperones

0 references

5

object named as

Bernd Bukau

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

Jonathan Weissman

3

object named as

Jonathan S Weissman

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

author name string

Annemarie H Becker

1

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

Eugene Oh

2

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

Günter Kramer

4

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

publication date

17 October 2013

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

Nature Protocols

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Europe PubMed Central

PubMed publication ID

5 August 2017

8

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

11

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

2212-2239

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

The ribosome as a hub for protein quality control

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

The cotranslational function of ribosome-associated Hsp70 in eukaryotic protein homeostasis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

Monitoring cotranslational protein folding in mammalian cells at codon resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

Ribosome-associated chaperones as key players in proteostasis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

The anti-Shine-Dalgarno sequence drives translational pausing and codon choice in bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

Protein N-terminal acetyltransferases: when the start matters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

Fast gapped-read alignment with Bowtie 2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

High-resolution view of the yeast meiotic program revealed by ribosome profiling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

On the specificity of antibiotics targeting the large ribosomal subunit.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

Selective ribosome profiling reveals the cotranslational chaperone action of trigger factor in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

Molecular chaperones in protein folding and proteostasis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

Defining the specificity of cotranslationally acting chaperones by systematic analysis of mRNAs associated with ribosome-nascent chain complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

Protein acetylation in prokaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

Thermodynamic characterization of ppGpp binding to EF-G or IF2 and of initiator tRNA binding to free IF2 in the presence of GDP, GTP, or ppGpp

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

Mammalian microRNAs predominantly act to decrease target mRNA levels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

MochiView: versatile software for genome browsing and DNA motif analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

Promiscuous Substrate Recognition in Folding and Assembly Activities of the Trigger Factor Chaperone

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

Converging concepts of protein folding in vitro and in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

Molecular mechanism and structure of Trigger Factor bound to the translating ribosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

Improved solubility of TEV protease by directed evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

Targeting proteins to membranes: structure of the signal recognition particle.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

Protein N-terminal methionine excision.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

Trigger factor binds to ribosome-signal-recognition particle (SRP) complexes and is excluded by binding of the SRP receptor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

Trigger Factor and DnaK possess overlapping substrate pools and binding specificities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

The ribosomal exit tunnel functions as a discriminating gate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

High sequence specificity of micrococcal nuclease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

Association of Ribonuclease I with Ribosomes and Their Subunits

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4001812

8 July 2018

Three-state equilibrium of Escherichia coli trigger factor

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.133

21 January 2018

L23 protein functions as a chaperone docking site on the ribosome

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.133

21 January 2018

Instruction of translating ribosome by nascent peptide

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.133

21 January 2018

DnaK functions as a central hub in the E. coli chaperone network.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.133

21 January 2018

Cutadapt removes adapter sequences from high-throughput sequencing reads

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.133

21 January 2018

Trigger factor binding to ribosomes with nascent peptide chains of varying lengths and sequences.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.133

21 January 2018

Signal sequence-independent membrane targeting of ribosomes containing short nascent peptides within the exit tunnel

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.133

21 January 2018

Low temperature or GroEL/ES overproduction permits growth of Escherichia coli cells lacking trigger factor and DnaK.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.133

21 January 2018

Trigger factor and DnaK cooperate in folding of newly synthesized proteins.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.133

21 January 2018

Proteome-wide Analysis of Chaperonin-Dependent Protein Folding in Escherichia coli

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.133

21 January 2018

Identifiers

10.1038/NPROT.2013.133

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

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