(Q35022331)

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A KH-domain RNA-binding protein interacts with FIERY2/CTD phosphatase-like 1 and splicing factors and is important for pre-mRNA splicing in Arabidopsis

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scholarly article

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Europe PubMed Central

PubMed publication ID

5 August 2017

A KH-domain RNA-binding protein interacts with FIERY2/CTD phosphatase-like 1 and splicing factors and is important for pre-mRNA splicing in Arabidopsis (English)

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

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RNA-binding proteins

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based on heuristic

inferred from title

6

object named as

Liming Xiong

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Europe PubMed Central

PubMed publication ID

5 August 2017

object named as

Shoudong Zhang

5

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author name string

Tao Chen

1

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

Peng Cui

2

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Europe PubMed Central

PubMed publication ID

5 August 2017

Hao Chen

3

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Europe PubMed Central

PubMed publication ID

5 August 2017

Shahjahan Ali

4

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Europe PubMed Central

PubMed publication ID

5 August 2017

publication date

17 October 2013

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Europe PubMed Central

PubMed publication ID

5 August 2017

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Europe PubMed Central

PubMed publication ID

5 August 2017

9

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Europe PubMed Central

PubMed publication ID

5 August 2017

10

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

e1003875

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Europe PubMed Central

PubMed publication ID

5 August 2017

copyright license

Creative Commons Attribution 4.0 International

17 October 2013

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April 2022 Public Data File from Crossref

copyright status

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The RNA polymerase II CTD coordinates transcription and RNA processing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

8 July 2018

Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis

1 reference

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8 July 2018

Mining Arabidopsis thaliana RNA-seq data with Integrated Genome Browser reveals stress-induced alternative splicing of the putative splicing regulator SR45a

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

8 July 2018

Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

8 July 2018

The RNA polymerase II C-terminal domain promotes splicing activation through recruitment of a U2AF65-Prp19 complex

1 reference

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8 July 2018

Functional characterization of four APETALA2-family genes (RAP2.6, RAP2.6L, DREB19 and DREB26) in Arabidopsis

1 reference

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8 July 2018

Arginine methylation mediated by the Arabidopsis homolog of PRMT5 is essential for proper pre-mRNA splicing

1 reference

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Nuclear speckles

1 reference

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8 July 2018

Four KH domains of the C. elegans Bicaudal-C ortholog GLD-3 form a globular structural platform

1 reference

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8 July 2018

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

1 reference

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8 July 2018

Progression through the RNA polymerase II CTD cycle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

8 July 2018

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

8 July 2018

Calcineurin-B-like protein CBL9 interacts with target kinase CIPK3 in the regulation of ABA response in seed germination

1 reference

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8 July 2018

SR proteins in vertical integration of gene expression from transcription to RNA processing to translation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

8 July 2018

Dynamic behavior of Arabidopsis eIF4A-III, putative core protein of exon junction complex: fast relocation to nucleolus and splicing speckles under hypoxia.

1 reference

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8 July 2018

TopHat: discovering splice junctions with RNA-Seq

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

8 July 2018

Protein structure prediction on the Web: a case study using the Phyre server

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

8 July 2018

The spliceosome: design principles of a dynamic RNP machine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

8 July 2018

The SR protein family of splicing factors: master regulators of gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

8 July 2018

Genome-wide analyses of alternative splicing in plants: opportunities and challenges.

1 reference

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8 July 2018

Splicing promotes rapid and efficient mRNA export in mammalian cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

8 July 2018

SR proteins function in coupling RNAP II transcription to pre-mRNA splicing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

8 July 2018

Alternative splicing of pre-messenger RNAs in plants in the genomic era.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

8 July 2018

Rules of engagement: co-transcriptional recruitment of pre-mRNA processing factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

8 July 2018

SRprises along a messenger's journey

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

8 July 2018

Arabidopsis C-terminal domain phosphatase-like 1 and 2 are essential Ser-5-specific C-terminal domain phosphatases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

8 July 2018

Regulation of flowering time in Arabidopsis by K homology domain proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

8 July 2018

Use of fluorescent protein tags to study nuclear organization of the spliceosomal machinery in transiently transformed living plant cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

8 July 2018

A new Arabidopsis gene, FLK, encodes an RNA binding protein with K homology motifs and regulates flowering time via FLOWERING LOCUS C

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

8 July 2018

Phosphorylation of serine 2 within the RNA polymerase II C-terminal domain couples transcription and 3' end processing

1 reference

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8 July 2018

Two RNA binding proteins, HEN4 and HUA1, act in the processing of AGAMOUS pre-mRNA in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

8 July 2018

Repression of stress-responsive genes by FIERY2, a novel transcriptional regulator in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

8 July 2018

C-terminal domain phosphatase-like family members (AtCPLs) differentially regulate Arabidopsis thaliana abiotic stress signaling, growth, and development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

8 July 2018

Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana

1 reference

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Communication of the position of exon-exon junctions to the mRNA surveillance machinery by the protein RNPS1

1 reference

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8 July 2018

Developmental and stress regulation of RCI2A and RCI2B, two cold-inducible genes of arabidopsis encoding highly conserved hydrophobic proteins

1 reference

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8 July 2018

KH domain: one motif, two folds

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

8 July 2018

Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription

1 reference

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Proteins binding to duplexed RNA: one motif, multiple functions

1 reference

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1 reference

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1 reference

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MEX-3 is a KH domain protein that regulates blastomere identity in early C. elegans embryos

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

8 July 2018

The pre-mRNA binding K protein contains a novel evolutionarily conserved motif

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798263

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1 reference

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1 reference

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The interferon-inducible double-stranded RNA-activated protein kinase self-associates in vitro and in vivo

1 reference

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1 reference

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Antagonistic interactions between Arabidopsis K-homology domain genes uncover PEPPER as a positive regulator of the central floral repressor FLOWERING LOCUS C.

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1 reference

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https://pubmed.ncbi.nlm.nih.gov/24146632

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1 reference

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Identifiers

10.1371/JOURNAL.PGEN.1003875

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

release_5w6zbejq4zhsnbc7cgldsop2p4

1 reference

https://api.fatcat.wiki/v0/release/5w6zbejq4zhsnbc7cgldsop2p4

24 November 2022

based on heuristic

mapped directly with Wikidata item

PMC publication ID

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Europe PubMed Central

PubMed publication ID

5 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

5 August 2017

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