(Q35023003)

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Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum

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Europe PubMed Central

PubMed publication ID

5 August 2017

Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum (English)

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Europe PubMed Central

PubMed publication ID

5 August 2017

Panicum virgatum

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Kevin L. Childs

3

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24947485%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Shawn M. Kaeppler

10

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24947485%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

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Joseph Evans

1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24947485%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Jeongwoon Kim

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24947485%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Brieanne Vaillancourt

4

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24947485%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Emily Crisovan

5

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9 June 2020

Aruna Nandety

6

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9 June 2020

Daniel J Gerhardt

7

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24947485%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Todd A Richmond

8

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24947485%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Jeffrey A Jeddeloh

9

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9 June 2020

Michael D Casler

11

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9 June 2020

C Robin Buell

12

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9 June 2020

publication date

11 August 2014

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5 August 2017

The Plant Journal

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9 June 2020

79

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9 June 2020

6

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24947485%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

993-1008

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24947485%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

describes a project that uses

1 reference

10 June 2022

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=4309430

Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

A next-generation sequencing method for genotyping-by-sequencing of highly heterozygous autotetraploid potato

1 reference

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8 July 2018

Whole-exome targeted sequencing of the uncharacterized pine genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

Comparative studies of copy number variation detection methods for next-generation sequencing technologies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.).

1 reference

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8 July 2018

Structural variants in the soybean genome localize to clusters of biotic stress-response genes

1 reference

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8 July 2018

Maize HapMap2 identifies extant variation from a genome in flux.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

Reference genome sequence of the model plant Setaria

1 reference

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8 July 2018

A genome-wide survey of switchgrass genome structure and organization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

Exploring the switchgrass transcriptome using second-generation sequencing technology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

A high-density simple sequence repeat-based genetic linkage map of switchgrass.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

The Pfam protein families database

1 reference

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8 July 2018

Genome-wide patterns of genetic variation in sweet and grain sorghum (Sorghum bicolor).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

Phenotypic and genomic analyses of a fast neutron mutant population resource in soybean

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

Rice structural variation: a comparative analysis of structural variation between rice and three of its closest relatives in the genus Oryza

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

Detection of inherited mutations for breast and ovarian cancer using genomic capture and massively parallel sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

Whole exome capture in solution with 3 Gbp of data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

Genome sequencing and analysis of the model grass Brachypodium distachyon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

BEDTools: a flexible suite of utilities for comparing genomic features

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

The B73 Maize Genome: Complexity, Diversity, and Dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

Amplification of prolamin storage protein genes in different subfamilies of the Poaceae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

1 reference

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8 July 2018

The Sequence Alignment/Map format and SAMtools

1 reference

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8 July 2018

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

The Sorghum bicolor genome and the diversification of grasses

1 reference

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8 July 2018

Net energy of cellulosic ethanol from switchgrass

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

PlantGDB: a resource for comparative plant genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana

1 reference

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8 July 2018

Genes encoding pentatricopeptide repeat (PPR) proteins are not conserved in location in plant genomes and may be subject to diversifying selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

The map-based sequence of the rice genome

1 reference

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8 July 2018

Analysis of expressed sequence tags and the identification of associated short tandem repeats in switchgrass.

1 reference

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8 July 2018

GMAP: a genomic mapping and alignment program for mRNA and EST sequences

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8 July 2018

The role of knox genes in plant development.

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8 July 2018

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8 July 2018

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8 July 2018

Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4309430

8 July 2018

Copy number variation of multiple genes at Rhg1 mediates nematode resistance in soybean

1 reference

https://api.crossref.org/works/10.1111%2FTPJ.12601

21 January 2018

Genome-wide comparison of nucleotide-binding site-leucine-rich repeat-encoding genes in Arabidopsis.

1 reference

https://api.crossref.org/works/10.1111%2FTPJ.12601

21 January 2018

Copy number variation in potato - an asexually propagated autotetraploid species.

1 reference

https://api.crossref.org/works/10.1111%2FTPJ.12601

21 January 2018

Targeted re-sequencing of the allohexaploid wheat exome

1 reference

https://api.crossref.org/works/10.1111%2FTPJ.12601

21 January 2018

Hierarchical classification of switchgrass genotypes using SSR and chloroplast sequences: ecotypes, ploidies, gene pools, and cultivars.

1 reference

https://api.crossref.org/works/10.1111%2FTPJ.12601

21 January 2018

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25 October 2018

Generation of Transcript Assemblies and Identification of Single Nucleotide Polymorphisms from Seven Lowland and Upland Cultivars of Switchgrass

1 reference

https://api.crossref.org/works/10.1111%2FTPJ.12601

21 January 2018

Changes in genome content generated via segregation of non-allelic homologs

1 reference

https://pubmed.ncbi.nlm.nih.gov/24947485

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA duplication associated with Charcot-Marie-Tooth disease type 1A

1 reference

https://pubmed.ncbi.nlm.nih.gov/24947485

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1111/TPJ.12601

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24947485%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24947485%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24947485%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

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