(Q35024717)

5 August 2017

title

Integrated metagenomic and metatranscriptomic analyses of microbial communities in the meso- and bathypelagic realm of north pacific ocean (English)

1 reference

5 August 2017

0 references

1 reference

Jieying Wu

1

1 reference

5 August 2017

Weimin Gao

2

1 reference

5 August 2017

Roger H Johnson

3

1 reference

5 August 2017

Weiwen Zhang

4

1 reference

5 August 2017

Deirdre R Meldrum

5

1 reference

5 August 2017

publication date

11 October 2013

1 reference

5 August 2017

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5 August 2017

volume

11

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5 August 2017

issue

10

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5 August 2017

page(s)

3777-3801

1 reference

Creative Commons Attribution 4.0 International

5 August 2017

copyright license

start time

11 October 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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8 July 2018

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Independent genome reduction and phylogenetic reclassification of the oceanic SAR11 clade

8 July 2018

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8 July 2018

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Comparison of microbial communities associated with three Atlantic ultramafic hydrothermal systems

8 July 2018

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Phylogenetic and gene expression analysis of cyanobacteria and diatoms in the twilight waters of the temperate northeast Pacific Ocean

8 July 2018

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Isolation and characterisation of bacteria from the Eastern Mediterranean deep sea.

8 July 2018

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Microbial ecology of the dark ocean above, at, and below the seafloor

8 July 2018

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Going deeper: metagenome of a hadopelagic microbial community

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology

8 July 2018

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Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG

8 July 2018

1 reference

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Metagenomic analysis of 0.2-μm-passable microorganisms in deep-sea hydrothermal fluid.

8 July 2018

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Microbial community composition and function in permanently cold seawater and sediments from an arctic fjord of svalbard

8 July 2018

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Microbial metatranscriptomics in a permanent marine oxygen minimum zone.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Aggregata bathytherma sp. nov. (Apicomplexa:Aggregatidae), a new coccidian parasite associated with a deep-sea hydrothermal vent octopus

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Ammonia-oxidising archaea--physiology, ecology and evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Comparison between NuGEN's WT-Ovation Pico and one-direct amplification systems.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Ecology and biogeography of free-living nematodes associated with chemosynthetic environments in the deep sea: a review

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

The phylogeography of the Placozoa suggests a taxon-rich phylum in tropical and subtropical waters

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Transcriptomic analysis of a marine bacterial community enriched with dimethylsulfoniopropionate

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Phylogenetic diversity and metabolic potential revealed in a glacier ice metagenome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Importance of proteins controlling initiation of DNA replication in the growth of the high-pressure-loving bacterium Photobacterium profundum SS9

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Fungal diversity in deep-sea hydrothermal ecosystems

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Microbial community structure in the North Pacific ocean

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Comparative metagenomic analysis of a microbial community residing at a depth of 4,000 meters at station ALOHA in the North Pacific subtropical gyre

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Latitudinal distribution of prokaryotic picoplankton populations in the Atlantic Ocean.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

GeoChip-based analysis of metabolic diversity of microbial communities at the Juan de Fuca Ridge hydrothermal vent

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Analyzing gene expression from marine microbial communities using environmental transcriptomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Placozoa and the evolution of Metazoa and intrasomatic cell differentiation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Detection of large numbers of novel sequences in the metatranscriptomes of complex marine microbial communities

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Presence and activity of anaerobic ammonium-oxidizing bacteria at deep-sea hydrothermal vents

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Simultaneous assessment of soil microbial community structure and function through analysis of the meta-transcriptome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Unveiling new microbial eukaryotes in the surface ocean

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Microbial community gene expression in ocean surface waters

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

An Earth-system perspective of the global nitrogen cycle

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Yeast forms dominate fungal diversity in the deep oceans

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Metagenomics of the deep Mediterranean, a warm bathypelagic habitat

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Diversity of microbial eukaryotes in sediment at a deep-sea methane cold seep: surveys of ribosomal DNA libraries from raw sediment samples and two enrichment cultures

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

DNA adenine methylation and bacterial pathogenesis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Community genomics among stratified microbial assemblages in the ocean's interior

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Molecular evidence demonstrating the basidiomycetous fungus Cryptococcus curvatus is the dominant microbial eukaryote in sediment at the Kuroshima Knoll methane seep

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Deep-sea hydrothermal vent parasites: why do we not find more?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Occurrence in the field of a long-term, year-round, stable population of placozoans

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Drugs from the deep: marine natural products as drug candidates

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Incidence and diversity of microorganisms within the walls of an active deep-sea sulfide chimney

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Histidine protein kinases: key signal transducers outside the animal kingdom

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Active transport of iron and siderophore antibiotics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Study of genetic diversity of eukaryotic picoplankton in different oceanic regions by small-subunit rRNA gene cloning and sequencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Archaeal dominance in the mesopelagic zone of the Pacific Ocean

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

PAS domains: internal sensors of oxygen, redox potential, and light

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826135

Dissolved organic carbon support of respiration in the dark ocean.

8 July 2018

1 reference

https://api.crossref.org/works/10.3390%2FMD11103777

Developing a new resource for drug discovery: marine actinomycete bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMD11103777

Transcriptional responses of surface water marine microbial assemblages to deep-sea water amendment

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMD11103777

Optimization of whole-transcriptome amplification from low cell density deep-sea microbial samples for metatranscriptomic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMD11103777

Contribution of Archaea to total prokaryotic production in the deep Atlantic Ocean.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMD11103777

Diversity and distribution of Planctomycetes and related bacteria in the suboxic zone of the Black Sea.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMD11103777

Characterisation of dihydrodipicolinate synthase (DHDPS) from Bacillus anthracis.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMD11103777

Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMD11103777

Active mesopelagic prokaryotes support high respiration in the subtropical northeast Atlantic Ocean

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMD11103777

Nucleic acid concentrations (DNA, RNA) in the continental and deep-sea sediments of the eastern Mediterranean: relationships with seasonally varying organic inputs and bacterial dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMD11103777

Regulation of aquatic microbial processes: the ‘microbial loop’ of the sunlit surface waters and the dark ocean dissected

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FMD11103777

High contribution of SAR11 to microbial activity in the north west Mediterranean Sea

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24152557

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

CELL AGGREGATION OF THE CYANOBACTERIUM SYNECHOCOCCUS ELONGATUS: ROLE OF THE ELECTRON TRANSPORT CHAIN

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24152557

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3390/MD11103777

1 reference

5 August 2017

1 reference

5 August 2017

1 reference