(Q34091751)

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amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions

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scholarly article

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Europe PubMed Central

31 July 2017

amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions (English)

1 reference

Europe PubMed Central

31 July 2017

1 reference

based on heuristic

inferred from title

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Barbara Reinhold-Hurek

7

object named as

Barbara Reinhold-Hurek

1 reference

Europe PubMed Central

31 July 2017

object named as

Michael Pester

1

0 references

object named as

Alexander Loy

8

0 references

Andreas Richter

object named as

Andreas Richter

5

0 references

object named as

Thomas Rattei

2

0 references

object named as

Michael Wagner

9

0 references

6

object named as

Jörg Overmann

1 reference

Europe PubMed Central

31 July 2017

author name string

Stefan Flechl

3

1 reference

Europe PubMed Central

31 July 2017

Alexander Gröngröft

4

1 reference

Europe PubMed Central

31 July 2017

publication date

5 December 2011

1 reference

Europe PubMed Central

31 July 2017

Environmental Microbiology

1 reference

Europe PubMed Central

31 July 2017

14

1 reference

Europe PubMed Central

31 July 2017

2

1 reference

Europe PubMed Central

31 July 2017

525-539

1 reference

Europe PubMed Central

31 July 2017

Genome sequence of an ammonia-oxidizing soil archaeon, "Candidatus Nitrosoarchaeum koreensis" MY1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3328746

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Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3328746

5 July 2018

Potential of pmoA amplicon pyrosequencing for methanotroph diversity studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3328746

5 July 2018

The Thaumarchaeota: an emerging view of their phylogeny and ecophysiology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3328746

5 July 2018

Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3328746

5 July 2018

Ammonia oxidation coupled to CO2 fixation by archaea and bacteria in an agricultural soil

1 reference

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5 July 2018

Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis

1 reference

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5 July 2018

Autotrophic growth of nitrifying community in an agricultural soil

1 reference

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5 July 2018

Ammonia concentration determines differential growth of ammonia-oxidising archaea and bacteria in soil microcosms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3328746

5 July 2018

Spatial distribution of ammonia-oxidizing bacteria and archaea across a 44-hectare farm related to ecosystem functioning

1 reference

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5 July 2018

Examining the global distribution of dominant archaeal populations in soil

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3328746

5 July 2018

Ammonia-oxidising archaea--physiology, ecology and evolution

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5 July 2018

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Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource

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5 July 2018

Archaea rather than bacteria control nitrification in two agricultural acidic soils

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3328746

5 July 2018

Autotrophic ammonia oxidation by soil thaumarchaea.

1 reference

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5 July 2018

Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota

1 reference

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5 July 2018

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea

1 reference

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5 July 2018

QIIME allows analysis of high-throughput community sequencing data

1 reference

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5 July 2018

Associations between species and groups of sites: indices and statistical inference.

1 reference

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5 July 2018

CD-HIT Suite: a web server for clustering and comparing biological sequences

1 reference

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5 July 2018

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1 reference

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5 July 2018

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

1 reference

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5 July 2018

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3328746

5 July 2018

Environmental factors shaping the ecological niches of ammonia-oxidizing archaea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3328746

5 July 2018

Relative contributions of archaea and bacteria to aerobic ammonia oxidation in the environment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3328746

5 July 2018

The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3328746

5 July 2018

Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3328746

5 July 2018

Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3328746

5 July 2018

A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring

1 reference

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5 July 2018

Cultivation of a thermophilic ammonia oxidizing archaeon synthesizing crenarchaeol

1 reference

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5 July 2018

IMG/M: a data management and analysis system for metagenomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3328746

5 July 2018

Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3328746

5 July 2018

High abundance of Crenarchaeota in a temperate acidic forest soil

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3328746

5 July 2018

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3328746

5 July 2018

Archaea predominate among ammonia-oxidizing prokaryotes in soils

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3328746

5 July 2018

Marine microbial diversity: can it be determined?

1 reference

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5 July 2018

Quantifying archaeal community autotrophy in the mesopelagic ocean using natural radiocarbon.

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5 July 2018

Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota

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5 July 2018

Microbial biogeography: putting microorganisms on the map

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5 July 2018

Predicting microbial species richness

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3328746

5 July 2018

Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3328746

5 July 2018

Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3328746

5 July 2018

Isolation of an autotrophic ammonia-oxidizing marine archaeon

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

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Environmental genome shotgun sequencing of the Sargasso Sea

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ARB: a software environment for sequence data

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5 July 2018

FrameD: A flexible program for quality check and gene prediction in prokaryotic genomes and noisy matured eukaryotic sequences

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5 July 2018

Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys

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Marine planktonic archaea take up amino acids

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5 July 2018

Everything in moderation: archaea as 'non-extremophiles'.

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5 July 2018

Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria

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5 July 2018

Ammonia or ammonium ion as substrate for oxidation by Nitrosomonas europaea cells and extracts

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5 July 2018

Archaea in coastal marine environments

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5 July 2018

Novel major archaebacterial group from marine plankton

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5 July 2018

DNA sequence quality trimming and vector removal.

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21 January 2018

Ammonia-oxidizing bacteria and archaea grow under contrasting soil nitrogen conditions

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21 January 2018

The bioenergetics of ammonia and hydroxylamine oxidation in Nitrosomonas europaea at acid and alkaline pH

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21 January 2018

Systematic artifacts in metagenomes from complex microbial communities.

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21 January 2018

Contribution of Archaea to total prokaryotic production in the deep Atlantic Ocean.

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21 January 2018

Bacteria rather than Archaea dominate microbial ammonia oxidation in an agricultural soil.

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21 January 2018

Ultra-deep pyrosequencing of pmoA amplicons confirms the prevalence of Methylomonas and Methylocystis in Sphagnum mosses from a Dutch peat bog

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21 January 2018

Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria

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21 January 2018

A novel family of functional operons encoding methane/ammonia monooxygenase-related proteins in gammaproteobacterial methanotrophs

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21 January 2018

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1111/J.1462-2920.2011.02666.X

1 reference

Europe PubMed Central

31 July 2017

1 reference

Europe PubMed Central

31 July 2017

1 reference

Europe PubMed Central

31 July 2017

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