(Q35025305)

5 August 2017

title

Flexibly varying folding mechanism of a nearly symmetrical protein: B domain of protein A. (English)

1 reference

5 August 2017

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Kazuhito Itoh

1

1 reference

5 August 2017

Masaki Sasai

series ordinal

2

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5 August 2017

language of work or name

English

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publication date

28 April 2006

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5 August 2017

number of pages

6

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Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

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5 August 2017

volume

103

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5 August 2017

issue

19

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5 August 2017

page(s)

7298-7303

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A funneled energy landscape for cytochrome c directly predicts the sequential folding route inferred from hydrogen exchange experiments

5 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564280

A recurring theme in protein engineering: the design, stability and folding of repeat proteins.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564280

Latest folding game results: protein A barely frustrates computationalists

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564280

Theory of protein folding

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564280

Testing protein-folding simulations by experiment: B domain of protein A.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564280

Folding a protein in a computer: An atomic description of the folding/unfolding of protein A

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564280

An atomically detailed study of the folding pathways of protein A with the stochastic difference equation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564280

A structure-based method for derivation of all-atom potentials for protein folding

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564280

Solution structure of an immunoactive peptide fragment of Staphylococcal protein-A.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564280

Investigation of routes and funnels in protein folding by free energy functional methods

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564280

Staphylococcal protein A: unfolding pathways, unfolded states, and differences between the B and E domains

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564280

Exploring the origins of topological frustration: design of a minimally frustrated model of fragment B of protein A.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564280

A simple model for calculating the kinetics of protein folding from three-dimensional structures

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564280

Folding funnels and frustration in off-lattice minimalist protein landscapes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564280

Folding thermodynamics of a model three-helix-bundle protein.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564280

Exploring the folding free energy surface of a three-helix bundle protein

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564280

Structural comparison in solution of a native and retro peptide derived from the third helix of Staphylococcus aureus protein A, domain B: retro peptides, a useful tool for the discrimination of helix stabilization factors dependent on the peptide c

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564280

Absence of a stable intermediate on the folding pathway of protein A.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564280

Symmetry and the energy landscapes of biomolecules

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564280

Studies on protein folding, unfolding and fluctuations by computer simulation. I. The effect of specific amino acid sequence represented by specific inter-unit interactions

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564280

Protein Folding: A Perspective from Theory and Experiment.

8 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510324103

Gatekeepers in the ribosomal protein s6: thermodynamics, kinetics, and folding pathways revealed by a minimalist protein model

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510324103

Quantifying the roughness on the free energy landscape: entropic bottlenecks and protein folding rates

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510324103

Preorganized secondary structure as an important determinant of fast protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510324103

Application of the diffusion-collision model to the folding of three-helix bundle proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510324103

The energy landscape of modular repeat proteins: topology determines folding mechanism in the ankyrin family

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510324103

Transition state ensemble for the folding of B domain of protein A: a comparison of distributed molecular dynamics simulations with experiments

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564280

25 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510324103

Folding of a small helical protein using hydrogen bonds and hydrophobicity forces

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510324103

The role of sidechain packing and native contact interactions in folding: Discontinuous molecular dynamics folding simulations of an all-atom Gō model of fragment B of Staphylococcal protein A

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0510324103

Interpreting the folding kinetics of helical proteins

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564280

Characterization of the folding kinetics of a three-helix bundle protein via a minimalist Langevin model

9 December 2018

1 reference

12 December 2020

Exact solution of the Muñoz-Eaton model for protein folding

1 reference

12 December 2020

Ab initio folding of helix bundle proteins using molecular dynamics simulations

1 reference

12 December 2020

Symmetric connectivity of secondary structure elements enhances the diversity of folding pathways

1 reference

12 December 2020

Kinetic studies of folding of the B-domain of staphylococcal protein A with molecular dynamics and a united-residue (UNRES) model of polypeptide chains

1 reference

12 December 2020

First-principles calculation of the folding free energy of a three-helix bundle protein

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0510324103

1 reference

release_xbgktfpmijhjrmuvw7naix5acu

5 August 2017

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/xbgktfpmijhjrmuvw7naix5acu

24 November 2022

mapped directly with Wikidata item

PMC publication ID

1564280

1 reference

5 August 2017

1 reference