(Q35026886)

5 August 2017

Quantifying protein interaction dynamics by SWATH mass spectrometry: application to the 14-3-3 system (English)

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5 August 2017

7

Ruedi Aebersold

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5 August 2017

Ludovic C Gillet

2

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Ben C Collins

object named as

Ben C Collins

1

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George Rosenberger

object named as

George Rosenberger

3

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Hannes L. Röst

object named as

Hannes L Röst

4

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author name string

Anton Vichalkovski

5

1 reference

5 August 2017

Matthias Gstaiger

6

1 reference

5 August 2017

language of work or name

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27 October 2013

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5 August 2017

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5 August 2017

10

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5 August 2017

1246-1253

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5 August 2017

12

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https://scigraph.springernature.com/pub.10.1038/nmeth.2703

5 August 2017

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Biotin tagging coupled with amino acid-coded mass tagging for efficient and precise screening of interaction proteome in mammalian cells

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Visualization and biochemical analyses of the emerging mammalian 14-3-3-phosphoproteome

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Differential 14-3-3 affinity capture reveals new downstream targets of phosphatidylinositol 3-kinase signaling

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Global phosphoproteomics identifies a major role for AKT and 14-3-3 in regulating EDC3

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Proteome survey reveals modularity of the yeast cell machinery

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Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

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An integrated workflow for charting the human interaction proteome: insights into the PP2A system

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Quantitative proteomics combined with BAC TransgeneOmics reveals in vivo protein interactions

21 January 2018

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Defining the human deubiquitinating enzyme interaction landscape

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Interlaboratory reproducibility of large-scale human protein-complex analysis by standardized AP-MS

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Differential network biology

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Quantitative interaction proteomics using mass spectrometry

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Cell fate decisions are specified by the dynamic ERK interactome

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Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics

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Modularity and hormone sensitivity of the Drosophila melanogaster insulin receptor/target of rapamycin interaction proteome

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Options and considerations when selecting a quantitative proteomics strategy

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Selected reaction monitoring mass spectrometry reveals the dynamics of signaling through the GRB2 adaptor

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Temporal regulation of EGF signalling networks by the scaffold protein Shc1

21 January 2018

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Shotgun collision-induced dissociation of peptides using a time of flight mass analyzer

21 January 2018

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Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra

21 January 2018

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UPLC/MS(E); a new approach for generating molecular fragment information for biomarker structure elucidation

21 January 2018

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Precursor acquisition independent from ion count: how to dive deeper into the proteomics ocean.

21 January 2018

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Multiplexed MS/MS for improved data-independent acquisition

21 January 2018

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Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

21 January 2018

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mProphet: automated data processing and statistical validation for large-scale SRM experiments

21 January 2018

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Development and validation of a spectral library searching method for peptide identification from MS/MS.

21 January 2018

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Secretomic analysis identifies alpha-1 antitrypsin (A1AT) as a required protein in cancer cell migration, invasion, and pericellular fibronectin assembly for facilitating lung colonization of lung adenocarcinoma cells

21 January 2018

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Identification of a proline-rich Akt substrate as a 14-3-3 binding partner

21 January 2018

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Systematic Discovery of In Vivo Phosphorylation Networks

21 January 2018

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mTOR signaling at a glance

21 January 2018

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Characterization of Rictor phosphorylation sites reveals direct regulation of mTOR complex 2 by S6K1

21 January 2018

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Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition

21 January 2018

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Quantitative measurements of N-linked glycoproteins in human plasma by SWATH-MS.

21 January 2018

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Estimation of absolute protein quantities of unlabeled samples by selected reaction monitoring mass spectrometry

21 January 2018

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A high-throughput approach for measuring temporal changes in the interactome

21 January 2018

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A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells

21 January 2018

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A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis

21 January 2018

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General framework for developing and evaluating database scoring algorithms using the TANDEM search engine

21 January 2018

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TANDEM: matching proteins with tandem mass spectra

21 January 2018

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Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

21 January 2018

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iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates

21 January 2018

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21 January 2018

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21 January 2018

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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

21 January 2018

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Noise-robust soft clustering of gene expression time-course data

21 January 2018

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PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation

21 January 2018

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Integrated network analysis platform for protein-protein interactions

21 January 2018

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iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence

21 January 2018

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Mapping differential interactomes by affinity purification coupled with data-independent mass spectrometry acquisition

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24162925

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Protein significance analysis in selected reaction monitoring (SRM) measurements

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24162925

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NMETH.2703

1 reference

Dimensions Publication ID

5 August 2017

0 references

1 reference