(Q34555110)

3 August 2017

A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis (English)

1 reference

quantitative trait analysis

3 August 2017

1 reference

1 reference

3

Henry Lam

1 reference

3 August 2017

Mathieu Clément-Ziza

2

0 references

Simon Alberti

Simon Alberti

14

0 references

Hannes L. Röst

Hannes Röst

7

0 references

Andreas Beyer

Andreas Beyer

18

0 references

Paola Picotti

1

Paola Picotti

1 reference

3 August 2017

Jacob J Michaelson

12

0 references

Ruedi Aebersold

19

Ruedi Aebersold

1 reference

3 August 2017

6

Eric W Deutsch

1 reference

3 August 2017

15

Ulrike Kusebauch

1 reference

3 August 2017

5

Alexander Schmidt

1 reference

3 August 2017

David S Campbell

4

1 reference

3 August 2017

Zhi Sun

8

1 reference

3 August 2017

Oliver Rinner

9

1 reference

3 August 2017

Lukas Reiter

10

1 reference

3 August 2017

Qin Shen

11

1 reference

3 August 2017

Andreas Frei

13

1 reference

3 August 2017

Bernd Wollscheid

16

1 reference

3 August 2017

Robert L Moritz

17

1 reference

3 August 2017

language of work or name

English

0 references

publication date

20 January 2013

1 reference

3 August 2017

1 reference

3 August 2017

494

1 reference

3 August 2017

266-270

1 reference

3 August 2017

7436

1 reference

https://scigraph.springernature.com/pub.10.1038/nature11835

3 August 2017

0 references

cites work

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Interfaces to PeptideAtlas: a case study of standard data access systems.

7 July 2018

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Teamwork: improved eQTL mapping using combinations of machine learning methods

7 July 2018

1 reference

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Reproducible quantification of cancer-associated proteins in body fluids using targeted proteomics

7 July 2018

1 reference

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Using iRT, a normalized retention time for more targeted measurement of peptides

7 July 2018

1 reference

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A computational tool to detect and avoid redundancy in selected reaction monitoring

7 July 2018

1 reference

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Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

7 July 2018

1 reference

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The mystery of missing heritability: Genetic interactions create phantom heritability

7 July 2018

1 reference

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Genetic variation shapes protein networks mainly through non-transcriptional mechanisms

7 July 2018

1 reference

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iProphet: multi-level integrative analysis of shotgun proteomic data improves peptide and protein identification rates and error estimates

7 July 2018

1 reference

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Absolute quantification of microbial proteomes at different states by directed mass spectrometry

7 July 2018

1 reference

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Comparative analysis of proteome and transcriptome variation in mouse

7 July 2018

1 reference

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mProphet: automated data processing and statistical validation for large-scale SRM experiments

7 July 2018

1 reference

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Saccharomyces cerevisiae Bat1 and Bat2 aminotransferases have functionally diverged from the ancestral-like Kluyveromyces lactis orthologous enzyme

7 July 2018

1 reference

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Phosphoproteomic analysis reveals interconnected system-wide responses to perturbations of kinases and phosphatases in yeast

7 July 2018

1 reference

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Software pipeline and data analysis for MS/MS proteomics: the trans-proteomic pipeline

7 July 2018

1 reference

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Generating and navigating proteome maps using mass spectrometry.

7 July 2018

1 reference

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Data-driven assessment of eQTL mapping methods

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Options and considerations when selecting a quantitative proteomics strategy

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

A guided tour of the Trans-Proteomic Pipeline

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

7 July 2018

The PeptideAtlas Project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Spectral library searching for peptide identification via tandem MS.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

High-throughput generation of selected reaction-monitoring assays for proteins and proteomes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Unique ion signature mass spectrometry, a deterministic method to assign peptide identity.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Personal genomes: The case of the missing heritability

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

A database of mass spectrometric assays for the yeast proteome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Selected reaction monitoring for quantitative proteomics: a tutorial

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Building consensus spectral libraries for peptide identification in proteomics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

A genecentric Human Protein Atlas for expression profiles based on antibodies

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

An integrated, directed mass spectrometric approach for in-depth characterization of complex peptide mixtures

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Genetic basis of proteome variation in yeast

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Development and validation of a spectral library searching method for peptide identification from MS/MS.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Sequence-specific retention calculator. Algorithm for peptide retention prediction in ion-pair RP-HPLC: application to 300- and 100-A pore size C18 sorbents

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Using annotated peptide mass spectrum libraries for protein identification

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

General framework for developing and evaluating database scoring algorithms using the TANDEM search engine

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Improved scoring of functional groups from gene expression data by decorrelating GO graph structure

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

7 July 2018

The PeptideAtlas project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

BioGRID: a general repository for interaction datasets

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Scoring proteomes with proteotypic peptide probes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

A common open representation of mass spectrometry data and its application to proteomics research

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Open mass spectrometry search algorithm

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

An improved model for prediction of retention times of tryptic peptides in ion pair reversed-phase HPLC: its application to protein peptide mapping by off-line HPLC-MALDI MS.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

TANDEM: matching proteins with tandem mass spectra

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Global analysis of protein expression in yeast

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Mass spectrometry-based proteomics

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

The SPOT-synthesis technique. Synthetic peptide arrays on membrane supports--principles and applications

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Genetic dissection of transcriptional regulation in budding yeast

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

The Sequence of the Human Genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Isolation and DNA sequence of ADH3, a nuclear gene encoding the mitochondrial isozyme of alcohol dehydrogenase in Saccharomyces cerevisiae

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

ProteomeBinders: planning a European resource of affinity reagents for analysis of the human proteome

7 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE11835

Computational prediction of proteotypic peptides for quantitative proteomics.

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE11835

Evidence for widespread adaptive evolution of gene expression in budding yeast

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNATURE11835

Bootstrapping the interactome: unsupervised identification of protein complexes in yeast

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

Efficient fractionation and improved protein identification by peptide OFFGEL electrophoresis.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

The primary structure of the Saccharomyces cerevisiae gene for alcohol dehydrogenase

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951219

High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites

27 October 2018

1 reference

12 December 2020

Molecular and physiological aspects of alcohol dehydrogenases in the ethanol metabolism of Saccharomyces cerevisiae

1 reference

12 December 2020

A pilot project to generate affinity reagents to human proteins

1 reference

12 December 2020

The implications of proteolytic background for shotgun proteomics

1 reference

12 December 2020

Two-stage Off-Gel isoelectric focusing: protein followed by peptide fractionation and application to proteome analysis of human plasma

1 reference

12 December 2020

Identifiers

DOI

10.1038/NATURE11835

1 reference

3 August 2017

1 reference

3 August 2017

1 reference