(Q37800025)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20944666%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

title

Generating and navigating proteome maps using mass spectrometry (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20944666%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20944666%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

Ermir Qeli

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20944666%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

Konrad Basler

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20944666%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

5

Ruedi Aebersold

1 reference

15 February 2020

Erich Brunner

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20944666%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

publication date

14 October 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20944666%20AND%20SRC:MED&resulttype=core&format=json

Nature Reviews Molecular Cell Biology

15 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20944666%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

volume

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20944666%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

issue

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20944666%20AND%20SRC:MED&resulttype=core&format=json

15 February 2020

page(s)

789-801

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20944666%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

15 February 2020

1 reference

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

1 reference

Progress with proteome projects: why all proteins expressed by a genome should be identified and how to do it.

21 January 2018

1 reference

Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition

21 January 2018

1 reference

Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides

21 January 2018

1 reference

Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins

21 January 2018

1 reference

Selected reaction monitoring for quantitative proteomics: a tutorial

21 January 2018

1 reference

A proteome catalog of Drosophila melanogaster: an essential resource for targeted quantitative proteomics.

21 January 2018

1 reference

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

21 January 2018

1 reference

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata

31 March 2020

1 reference

The human genome browser at UCSC

31 March 2020

1 reference

The Ensembl automatic gene annotation system

31 March 2020

1 reference

Quantitative monitoring of gene expression patterns with a complementary DNA microarray

31 March 2020

1 reference

Expression monitoring by hybridization to high-density oligonucleotide arrays

31 March 2020

1 reference

The transcriptional program of sporulation in budding yeast

31 March 2020

1 reference

Distinctive gene expression patterns in human mammary epithelial cells and breast cancers

31 March 2020

1 reference

Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling

31 March 2020

1 reference

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

31 March 2020

1 reference

A high-quality catalog of the Drosophila melanogaster proteome

31 March 2020

1 reference

Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia

31 March 2020

1 reference

RNA-Seq: a revolutionary tool for transcriptomics

31 March 2020

1 reference

The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources

31 March 2020

1 reference

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

31 March 2020

1 reference

Deterministic protein inference for shotgun proteomics data provides new insights into Arabidopsis pollen development and function.

31 March 2020

1 reference

PeptideClassifier for protein inference and targeted quantitative proteomics

31 March 2020

1 reference

Progress with gene-product mapping of the Mollicutes: Mycoplasma genitalium.

31 March 2020

1 reference

Modification-specific proteomics: characterization of post-translational modifications by mass spectrometry.

31 March 2020

1 reference

Proteome survey reveals modularity of the yeast cell machinery

31 March 2020

1 reference

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

31 March 2020

1 reference

Genetic Control of Biochemical Reactions in Neurospora

31 March 2020

1 reference

What is a gene, post-ENCODE? History and updated definition

31 March 2020

1 reference

Analysis and validation of proteomic data generated by tandem mass spectrometry

31 March 2020

1 reference

A statistical model for identifying proteins by tandem mass spectrometry

31 March 2020

1 reference

Improving reproducibility and sensitivity in identifying human proteins by shotgun proteomics

31 March 2020

1 reference

Proteomic parsimony through bipartite graph analysis improves accuracy and transparency

31 March 2020

1 reference

Improving sensitivity by probabilistically combining results from multiple MS/MS search methodologies

31 March 2020

1 reference

IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering

31 March 2020

1 reference

A bayesian approach to protein inference problem in shotgun proteomics

31 March 2020

1 reference

Protein and gene model inference based on statistical modeling in k-partite graphs.

31 March 2020

1 reference

Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry

31 March 2020

1 reference

Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma

31 March 2020

1 reference

Characterization of mouse spleen cells by subtractive proteomics

31 March 2020

1 reference

Sperm chromatin proteomics identifies evolutionarily conserved fertility factors

31 March 2020

1 reference

Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system

31 March 2020

1 reference

Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling

31 March 2020

1 reference

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

31 March 2020

1 reference

Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans

31 March 2020

1 reference

A HUPO test sample study reveals common problems in mass spectrometry-based proteomics

31 March 2020

1 reference

Quantitative mass spectrometry in proteomics: a critical review

31 March 2020

1 reference

Quantitative proteomics by metabolic labeling of model organisms

31 March 2020

1 reference

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

31 March 2020

1 reference

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

31 March 2020

1 reference

Tandem Mass Tags: A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MS

31 March 2020

1 reference

Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents

31 March 2020

1 reference

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

31 March 2020

1 reference

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

31 March 2020

1 reference

Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis

31 March 2020

1 reference

Quantitative mass spectrometry identifies insulin signaling targets in C. elegans

31 March 2020

1 reference

The impact of microRNAs on protein output

31 March 2020

1 reference

Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes

31 March 2020

1 reference

Quantitative proteomic analysis of single pancreatic islets

31 March 2020

1 reference

In vivo stable isotope labeling of fruit flies reveals post-transcriptional regulation in the maternal-to-zygotic transition

31 March 2020

1 reference

Comprehensive yeast proteome analysis using a capillary isoelectric focusing-based multidimensional separation platform coupled with ESI-MS/MS

31 March 2020

1 reference

Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics.

31 March 2020

1 reference

Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry

31 March 2020

1 reference

Open source system for analyzing, validating, and storing protein identification data

31 March 2020

1 reference

PRIDE: the proteomics identifications database

31 March 2020

1 reference

Proteomics FASTA archive and reference resource

31 March 2020

1 reference

NCBI Peptidome: a new public repository for mass spectrometry peptide identifications

31 March 2020

1 reference

False discovery rates and related statistical concepts in mass spectrometry-based proteomics

31 March 2020

1 reference

QVALITY: non-parametric estimation of q-values and posterior error probabilities

31 March 2020

1 reference

Protein identification false discovery rates for very large proteomics data sets generated by tandem mass spectrometry

31 March 2020

1 reference

False discovery rates of protein identifications: a strike against the two-peptide rule

31 March 2020

1 reference

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

31 March 2020

1 reference

Proteogenomic mapping as a complementary method to perform genome annotation

31 March 2020

1 reference

The human plasma proteome: history, character, and diagnostic prospects

31 March 2020

1 reference

Characterization of the low molecular weight human serum proteome

31 March 2020

1 reference

The critical evaluation of a comprehensive mass spectral library

31 March 2020

1 reference

Development and Performance of a Gas Chromatography−Time-of-Flight Mass Spectrometry Analysis for Large-Scale Nontargeted Metabolomic Studies of Human Serum

31 March 2020

1 reference

Characterization of peptides bound to the class I MHC molecule HLA-A2.1 by mass spectrometry

31 March 2020

1 reference

Peptides presented to the immune system by the murine class II major histocompatibility complex molecule I-Ad

31 March 2020

1 reference

Coherent membrane supports for parallel microsynthesis and screening of bioactive peptides

31 March 2020

1 reference

Development and validation of a spectral library searching method for peptide identification from MS/MS.

31 March 2020

1 reference

High-throughput generation of selected reaction-monitoring assays for proteins and proteomes

31 March 2020

1 reference

The implications of proteolytic background for shotgun proteomics

31 March 2020

1 reference

Computational prediction of proteotypic peptides for quantitative proteomics.

31 March 2020

1 reference

Prediction of high-responding peptides for targeted protein assays by mass spectrometry

31 March 2020

1 reference

Scoring proteomes with proteotypic peptide probes

31 March 2020

1 reference

31 March 2020

The PeptideAtlas project

1 reference

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

31 March 2020

1 reference

The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation

31 March 2020

1 reference

A database of mass spectrometric assays for the yeast proteome

31 March 2020

1 reference

Options and considerations when selecting a quantitative proteomics strategy

31 March 2020

1 reference

Directed mass spectrometry: towards hypothesis-driven proteomics

31 March 2020

1 reference

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

31 March 2020

1 reference

Automated detection of inaccurate and imprecise transitions in peptide quantification by multiple reaction monitoring mass spectrometry.

31 March 2020

1 reference

Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics

31 March 2020

1 reference

High sensitivity detection of plasma proteins by multiple reaction monitoring of N-glycosites

31 March 2020

1 reference

MRMer, an interactive open source and cross-platform system for data extraction and visualization of multiple reaction monitoring experiments

31 March 2020

1 reference

Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS

31 March 2020

1 reference

Metabolic labeling of C. elegans and D. melanogaster for quantitative proteomics.

31 March 2020

1 reference

Computational methods for protein identification from mass spectrometry data

31 March 2020

1 reference

Using annotated peptide mass spectrum libraries for protein identification

31 March 2020

1 reference

Spectral library searching for peptide identification via tandem MS.

31 March 2020

1 reference

De novo peptide sequencing and identification with precision mass spectrometry

31 March 2020

1 reference

Spectral dictionaries: Integrating de novo peptide sequencing with database search of tandem mass spectra

31 March 2020

1 reference

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

31 March 2020

1 reference

Semi-supervised learning for peptide identification from shotgun proteomics datasets.

31 March 2020

1 reference

Posterior error probabilities and false discovery rates: two sides of the same coin

31 March 2020

1 reference

Interpretation of shotgun proteomic data: the protein inference problem

31 March 2020

1 reference

EGASP: the human ENCODE Genome Annotation Assessment Project

31 March 2020

1 reference

Improving gene annotation using peptide mass spectrometry

31 March 2020

1 reference

Proteogenomics: needs and roles to be filled by proteomics in genome annotation

31 March 2020

1 reference

Mass Spectrometric Sequencing of Proteins from Silver-Stained Polyacrylamide Gels

31 March 2020

1 reference

Proteomics reveals open reading frames in Mycobacterium tuberculosis H37Rv not predicted by genomics

31 March 2020

1 reference

The complete genome and proteome of Mycoplasma mobile

31 March 2020

1 reference

Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation

31 March 2020

1 reference

Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics

31 March 2020

1 reference

Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations

31 March 2020

1 reference

Discovery and revision of Arabidopsis genes by proteogenomics

31 March 2020

1 reference

Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes

31 March 2020

1 reference

Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks

31 March 2020

1 reference

Quantitative interaction proteomics using mass spectrometry

31 March 2020

1 reference

Quantitative proteomic approach to study subcellular localization of membrane proteins

31 March 2020

1 reference

Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoring

31 March 2020

1 reference

Proteome organization in a genome-reduced bacterium

31 March 2020

1 reference

Shotgun proteomic analysis of Chlamydia trachomatis

31 March 2020

1 reference

Helicobacter pylori proteomics by 2-DE/MS, 1-DE-LC/MS and functional data mining

31 March 2020

1 reference

Proteome analysis of Halobacterium sp. NRC-1 facilitated by the biomodule analysis tool BMSorter

31 March 2020

1 reference

Halobacterium salinarum NRC-1 PeptideAtlas: toward strategies for targeted proteomics and improved proteome coverage

31 March 2020

1 reference

A proteomic view of an important human pathogen--towards the quantification of the entire Staphylococcus aureus proteome

31 March 2020

1 reference

From proteomics to systems biology of bacterial pathogens: Approaches, tools, and applications

31 March 2020

1 reference

Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags

31 March 2020

1 reference

Towards the entire proteome of the model bacterium Bacillus subtilis by gel-based and gel-free approaches

31 March 2020

1 reference

One-dimensional capillary liquid chromatographic separation coupled with tandem mass spectrometry unveils the Escherichia coli proteome on a microarray scale

31 March 2020

1 reference

Global proteomic analysis of the chromate response in Arthrobacter sp. strain FB24.

31 March 2020

1 reference

Comprehensive proteomics of Methylobacterium extorquens AM1 metabolism under single carbon and nonmethylotrophic conditions

31 March 2020

1 reference

Interfacing the Orbitrap Mass Analyzer to an Electrospray Ion Source

31 March 2020

1 reference

The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20944666

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Two-dimensional map of the proteome of Haemophilus influenzae

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20944666

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

SPOT synthesis. Epitope analysis with arrays of synthetic peptides prepared on cellulose membranes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20944666