(Q35047493)

6 August 2017

title

Multiple lineages of ancient CR1 retroposons shaped the early genome evolution of amniotes (English)

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6 August 2017

1

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13

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Jürgen Brosius

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6 August 2017

8

Arian F Smit

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6 August 2017

Federico G Hoffmann

10

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author name string

Gennady Churakov

2

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6 August 2017

Meganathan P Ramakodi

3

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6 August 2017

Roy N Platt

4

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6 August 2017

Jerzy Jurka

5

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6 August 2017

Kenji K Kojima

6

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6 August 2017

Juan Caballero

7

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6 August 2017

Kent A Vliet

9

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6 August 2017

Richard E Green

12

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6 August 2017

David A Ray

14

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6 August 2017

Jürgen Schmitz

15

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6 August 2017

publication date

11 December 2014

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Genome Biology and Evolution

6 August 2017

published in

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6 August 2017

volume

7

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6 August 2017

issue

1

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6 August 2017

page(s)

205-217

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Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs

6 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Whole-genome analyses resolve early branches in the tree of life of modern birds

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Early mesozoic coexistence of amniotes and hepadnaviridae

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Evolution and gene capture in ancient endogenous retroviruses - insights from the crocodilian genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Genomic Support for a Moa-Tinamou Clade and Adaptive Morphological Convergence in Flightless Ratites

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Three groups of transposable elements with contrasting copy number dynamics and host responses in the maize (Zea mays ssp. mays) genome.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

The Burmese python genome reveals the molecular basis for extreme adaptation in snakes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Genome analysis and signature discovery for diving and sensory properties of the endangered Chinese alligator

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Crocodylian diversity peak and extinction in the late Cenozoic of the northern Neotropics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Multiple nuclear genes and retroposons support vicariance and dispersal of the palaeognaths, and an Early Cretaceous origin of modern birds

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

CR1 retroposons provide a new insight into the phylogeny of Phasianidae species (Aves: Galliformes).

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

A universal method for the study of CR1 retroposons in nonmodel bird genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

A new eusuchian crocodyliform with novel cranial integument and its significance for the origin and evolution of Crocodylia

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

A time-calibrated species tree of Crocodylia reveals a recent radiation of the true crocodiles

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

The transposable element profile of the anolis genome: How a lizard can provide insights into the evolution of vertebrate genome size and structure

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

The genome of the green anole lizard and a comparative analysis with birds and mammals

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Mesozoic retroposons reveal parrots as the closest living relatives of passerine birds

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Complete mitochondrial genome sequences of three Crocodylus species and their comparison within the Order Crocodylia

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

A novel web-based TinT application and the chronology of the Primate Alu retroposon activity

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Paleogenomic data suggest mammal-like genome size in the ancestral amniote and derived large genome size in amphibians.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Search and clustering orders of magnitude faster than BLAST

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

PiggyBac-ing on a primate genome: novel elements, recent activity and horizontal transfer

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Genome evolution in Reptilia, the sister group of mammals

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

8 July 2018

The genome of a songbird

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Calibration of mutation rates reveals diverse subfamily structure of galliform CR1 repeats

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Transposable elements in reptilian and avian (sauropsida) genomes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Retroposon analysis and recent geological data suggest near-simultaneous divergence of the three superorders of mammals

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Mosaic retroposon insertion patterns in placental mammals

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

A rapid bootstrap algorithm for the RAxML Web servers

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Genome analysis of the platypus reveals unique signatures of evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Recent developments in the MAFFT multiple sequence alignment program

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Biased distributions and decay of long interspersed nuclear elements in the chicken genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Waves of genomic hitchhikers shed light on the evolution of gamebirds (Aves: Galliformes)

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Phylogenomic investigation of CR1 LINE diversity in reptiles

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Origin of avian genome size and structure in non-avian dinosaurs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Phylogenomics of nonavian reptiles and the structure of the ancestral amniote genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

SINEs of speciation: tracking lineages with retroposons

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Mitogenomic analyses place the gharial (Gavialis gangeticus) on the crocodile tree and provide pre-K/T divergence times for most crocodilians

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Repbase Update, a database of eukaryotic repetitive elements

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

The repetitive landscape of the chicken genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

MUSCLE: multiple sequence alignment with high accuracy and high throughput

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Combined support for wholesale taxic atavism in gavialine crocodylians

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

True and false gharials: a nuclear gene phylogeny of crocodylia

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

A phylogenetic foundation for comparative mammalian genomics

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Initial sequencing and analysis of the human genome

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

High rate of DNA loss in the Drosophila melanogaster and Drosophila virilis species groups

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Determination of the entire sequence of turtle CR1: the first open reading frame of the turtle CR1 element encodes a protein with a novel zinc finger motif

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Chicken repeat 1 (CR1) elements, which define an ancient family of vertebrate non-LTR retrotransposons, contain two closely spaced open reading frames

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Chicken repeat 1 elements contain a pol-like open reading frame and belong to the non-long terminal repeat class of retrotransposons

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Evolution of chicken repeat 1 (CR1) elements: evidence for ancient subfamilies and multiple progenitors

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

A chicken middle-repetitive DNA sequence which shares homology with mammalian ubiquitous repeats

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Genomic structure and possible retroviral origin of the chicken CR1 repetitive DNA sequence family

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

Basic local alignment search tool

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4316615

A complete skull ofAllodaposuchus precedensNopcsa, 1928 (Eusuchia) and a reassessment of the morphology of the taxon based on the Romanian remains

8 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU256

Subfamilies of CR1 non-LTR retrotransposons have different 5'UTR sequences but are otherwise conserved

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU256

Are transposable element insertions homoplasy free?: an examination using the avian tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU256

Insertion events of CR1 retrotransposable elements elucidate the phylogenetic branching order in galliform birds

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU256

The esterase and PHD domains in CR1-like non-LTR retrotransposons

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU256

Evolutionary dynamics in a novel L2 clade of non-LTR retrotransposons in Deuterostomia

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU256

The evolutionary dynamics of autonomous non-LTR retrotransposons in the lizard Anolis carolinensis shows more similarity to fish than mammals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU256

SINEs of a nearly perfect character.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU256

Cretaceous Crocodyliforms from the Sahara

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU256

Retroposon insertions and the chronology of avian sex chromosome evolution

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25503085

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Phylogenomic analysis of the L1 retrotransposons in Deuterostomia

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25503085

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/GBE/EVU256

1 reference

6 August 2017

1 reference

6 August 2017

1 reference