(Q35051011)

24267009

6 August 2017

title

PHDcleav: a SVM based method for predicting human Dicer cleavage sites using sequence and secondary structure of miRNA precursors (English)

1 reference

6 August 2017

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267009%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

G. P. S. Raghava

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267009%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

author name string

Rakesh Kaundal

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267009%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

publication date

9 October 2013

1 reference

6 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267009%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

volume

14 Suppl 14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267009%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

page(s)

S9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267009%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 2.0 Generic

8 June 2020

copyright license

start time

1 October 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Single Nucleotide Polymorphisms Associated with MicroRNA Regulation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

The loop position of shRNAs and pre-miRNAs is critical for the accuracy of dicer processing in vivo

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

A comprehensive analysis of precursor microRNA cleavage by human Dicer

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

A dynamic perspective of RNAi library development.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

miRdSNP: a database of disease-associated SNPs and microRNA target sites on 3'UTRs of human genes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

HIVsirDB: a database of HIV inhibiting siRNAs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Designing of highly effective complementary and mismatch siRNAs for silencing a gene

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Dicer recognizes the 5' end of RNA for efficient and accurate processing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

miRvar: A comprehensive database for genomic variations in microRNAs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Dicer's helicase domain discriminates dsRNA termini to promote an altered reaction mode

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Discovery of porcine microRNAs in multiple tissues by a Solexa deep sequencing approach

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Prediction of cytochrome P450 isoform responsible for metabolizing a drug molecule

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Modified dsRNAs that are not processed by Dicer maintain potency and are incorporated into the RISC

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

AntiBP2: improved version of antibacterial peptide prediction

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Structure of the Arabidopsis thaliana DCL4 DUF283 domain reveals a noncanonical double-stranded RNA-binding fold for protein-protein interaction

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Computational approaches for microRNA studies: a review

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

SNPs in human miRNA genes affect biogenesis and function

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Prediction of guide strand of microRNAs from its sequence and secondary structure

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

A role for the Dicer helicase domain in the processing of thermodynamically unstable hairpin RNAs

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

MicroRNA target site polymorphisms and human disease

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

UNAFold: software for nucleic acid folding and hybridization

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Common SNP in pre-miR-146a decreases mature miR expression and predisposes to papillary thyroid carcinoma

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Identification of functional microRNAs released through asymmetrical processing of HIV-1 TAR element

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Role of Dicer in posttranscriptional RNA silencing

8 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

8 July 2018

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S9

miRBase: tools for microRNA genomics

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

8 July 2018

Mammalian mirtron genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Analysis and prediction of antibacterial peptides.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Intronic microRNA precursors that bypass Drosha processing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Rational design and in vitro and in vivo delivery of Dicer substrate siRNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Single nucleotide polymorphism associated with mature miR-125a alters the processing of pri-miRNA.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Machine learning techniques in disease forecasting: a case study on rice blast prediction

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Dicer function is essential for lung epithelium morphogenesis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Support vector machine-based method for subcellular localization of human proteins using amino acid compositions, their order, and similarity search

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Dicer is required for embryonic angiogenesis during mouse development

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Mechanisms of gene silencing by double-stranded RNA

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure prediction

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Single processing center models for human Dicer and bacterial RNase III

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

MicroRNAs: genomics, biogenesis, mechanism, and function

8 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

8 July 2018

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S9

Vienna RNA secondary structure server

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

RSLpred: an integrative system for predicting subcellular localization of rice proteins combining compositional and evolutionary information

8 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S9

Combining machine learning and homology-based approaches to accurately predict subcellular localization in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S9

Secondary structure prediction with support vector machines

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S9

Multi-class protein fold recognition using support vector machines and neural networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S9

Grading amino acid properties increased accuracies of single point mutation on protein stability prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S9

A simple artificial microRNA vector based on ath-miR169d precursor from Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S9

ProPred1: prediction of promiscuous MHC Class-I binding sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S9

Analysis and prediction of affinity of TAP binding peptides using cascade SVM.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S9

Reliable prediction of Drosha processing sites improves microRNA gene prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S9

RNA secondary structural determinants of miRNA precursor processing in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S9

Structure determinants for accurate processing of miR172a in Arabidopsis thaliana.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S9

Identification of microRNA processing determinants by random mutagenesis of Arabidopsis MIR172a precursor.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S9

Synthetic dsRNA Dicer substrates enhance RNAi potency and efficacy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-S14-S9

Human Dicer binds short single-strand and double-strand RNA with high affinity and interacts with different regions of the nucleic acids.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3851333

Prediction of polyadenylation signals in human DNA sequences using nucleotide frequencies

25 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24267009

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-14-S14-S9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267009%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

DBLP publication ID

journals/bmcbi/AhmedKR13

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24267009%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

24267009

1 reference