(Q35081193)

6 August 2017

title

The eukaryotic ancestor had a complex ubiquitin signaling system of archaeal origin (English)

1 reference

6 August 2017

Xavier Grau-Bové

1

0 references

Iñaki Ruiz-Trillo

object named as

Iñaki Ruiz-Trillo

series ordinal

3

0 references

author name string

Arnau Sebé-Pedrós

series ordinal

2

1 reference

6 August 2017

publication date

17 December 2014

1 reference

Molecular Biology and Evolution

6 August 2017

published in

1 reference

6 August 2017

volume

32

1 reference

6 August 2017

issue

3

1 reference

6 August 2017

page(s)

726-739

1 reference

describes a project that uses

6 August 2017

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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8 July 2018

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8 July 2018

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8 July 2018

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8 July 2018

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The phylogenomic analysis of the anaphase promoting complex and its targets points to complex and modern-like control of the cell cycle in the last common ancestor of eukaryotes

8 July 2018

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8 July 2018

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The cullin-RING ubiquitin-protein ligases

8 July 2018

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ProtTest 3: fast selection of best-fit models of protein evolution

8 July 2018

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The Ufm1-activating enzyme Uba5 is indispensable for erythroid differentiation in mice

8 July 2018

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Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group.

8 July 2018

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Cytoscape 2.8: new features for data integration and network visualization

8 July 2018

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The SUMO pathway: emerging mechanisms that shape specificity, conjugation and recognition

8 July 2018

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Ancient origin of animal U-box ubiquitin ligases

8 July 2018

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Evolution of diverse cell division and vesicle formation systems in Archaea

8 July 2018

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Diversification and Specialization of Plant RBR Ubiquitin Ligases

8 July 2018

1 reference

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Rab protein evolution and the history of the eukaryotic endomembrane system

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Animal HECT ubiquitin ligases: evolution and functional implications

8 July 2018

1 reference

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Ubiquitin-like small archaeal modifier proteins (SAMPs) in Haloferax volcanii

8 July 2018

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Evolution of domain combinations in protein kinases and its implications for functional diversity

8 July 2018

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The Genome of the Amoeba Symbiont "Candidatus Amoebophilus asiaticus" Reveals Common Mechanisms for Host Cell Interaction among Amoeba-Associated Bacteria

8 July 2018

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BLAST+: architecture and applications

8 July 2018

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Diversification of the cullin family

8 July 2018

1 reference

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Origin and evolution of the Notch signalling pathway: an overview from eukaryotic genomes.

8 July 2018

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8 July 2018

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How microbes utilize host ubiquitination.

8 July 2018

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RING domain E3 ubiquitin ligases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

What was the set of ubiquitin and ubiquitin-like conjugating enzymes in the eukaryote common ancestor?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Physiological functions of the HECT family of ubiquitin ligases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Molecular discrimination of structurally equivalent Lys 63-linked and linear polyubiquitin chains

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Origin and function of ubiquitin-like proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

First and last ancestors: reconstructing evolution of the endomembrane system with ESCRTs, vesicle coat proteins, and nuclear pore complexes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Domain mobility in proteins: functional and evolutionary implications

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Natural history of the E1-like superfamily: implication for adenylation, sulfur transfer, and ubiquitin conjugation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Origins and evolution of eukaryotic RNA interference

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

An improved general amino acid replacement matrix

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Anatomy of the E2 ligase fold: implications for enzymology and evolution of ubiquitin/Ub-like protein conjugation

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Evolution of protein domain promiscuity in eukaryotes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

The evolutionary origin of hedgehog proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Modification in reverse: the SUMO proteases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

MAP kinases and the control of nuclear events

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Proteasome-independent functions of ubiquitin in endocytosis and signaling

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Regulation of gene transcription by mitogen-activated protein kinase signaling pathways.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

DDB1 functions as a linker to recruit receptor WD40 proteins to CUL4-ROC1 ubiquitin ligases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

The origin of introns and their role in eukaryogenesis: a compromise solution to the introns-early versus introns-late debate?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

The prokaryotic antecedents of the ubiquitin-signaling system and the early evolution of ubiquitin-like beta-grasp domains

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Domains, motifs, and scaffolds: the role of modular interactions in the evolution and wiring of cell signaling circuits.

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Modification of proteins by ubiquitin and ubiquitin-like proteins

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Comparative genomics and structural biology of the molecular innovations of eukaryotes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

An unusual choanoflagellate protein released by Hedgehog autocatalytic processing

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Insights into E3 ligase activity revealed by a SUMO-RanGAP1-Ubc9-Nup358 complex

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Function and regulation of cullin-RING ubiquitin ligases

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Complex spliceosomal organization ancestral to extant eukaryotes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Comparative genomics, evolution and origins of the nuclear envelope and nuclear pore complex

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Mechanism and function of deubiquitinating enzymes

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

A hitchhiker's guide to the cullin ubiquitin ligases: SCF and its kin

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

The ubiquitin 26S proteasome proteolytic pathway

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

The SCF ubiquitin ligase: insights into a molecular machine

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Protein modification by SUMO

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

A novel protein-conjugating system for Ufm1, a ubiquitin-fold modifier

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Conformational flexibility underlies ubiquitin ligation mediated by the WWP1 HECT domain E3 ligase

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

The F-box subunit of the SCF E3 complex is encoded by a diverse superfamily of genes in Arabidopsis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Horizontal gene transfer in prokaryotes: quantification and classification

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Evolution and function of ubiquitin-like protein-conjugation systems

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Functional heterogeneity of small ubiquitin-related protein modifiers SUMO-1 versus SUMO-2/3

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Structure of an E6AP-UbcH7 complex: insights into ubiquitination by the E2-E3 enzyme cascade

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Profile hidden Markov models

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Structure determination of the small ubiquitin-related modifier SUMO-1

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

The MAPK signaling cascade

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Archamoebae: the ancestral eukaryotes?

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327156

Matched-pairs tests of homogeneity with applications to homologous nucleotide sequences.

8 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU334

Computing topological parameters of biological networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU334

Eukaryotes with no mitochondria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU334

Evolution of a signalling system that incorporates both redundancy and diversity: Arabidopsis SUMOylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU334

SUMO-conjugating and SUMO-deconjugating enzymes from Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU334

An alternative root for the eukaryote tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU334

RBR ubiquitin ligases: Diversification and streamlining in animal lineages

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU334

Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU334

Genomic survey of premetazoans shows deep conservation of cytoplasmic tyrosine kinases and multiple radiations of receptor tyrosine kinases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU334

A congruent phylogenomic signal places eukaryotes within the Archaea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU334

Modules, multidomain proteins and organismic complexity

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25525215

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/MOLBEV/MSU334

1 reference

6 August 2017

1 reference

6 August 2017

1 reference