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Evolution of transcription factor function as a mechanism for changing metazoan developmental gene regulatory networks
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Europe PubMed Central
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4327956
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29 February 2020
review article
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title
Evolution of transcription factor function as a mechanism for changing metazoan developmental gene regulatory networks
(English)
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Europe PubMed Central
PMC publication ID
4327956
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25685316%20AND%20SRC:MED&resulttype=core&format=json
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29 February 2020
author
Alys Cheatle
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1
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Europe PubMed Central
PMC publication ID
4327956
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25685316%20AND%20SRC:MED&resulttype=core&format=json
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29 February 2020
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Veronica F Hinman
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2
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Europe PubMed Central
PMC publication ID
4327956
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29 February 2020
publication date
29 January 2015
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4327956
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29 February 2020
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EvoDevo
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4327956
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29 February 2020
volume
6
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Europe PubMed Central
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4327956
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25685316%20AND%20SRC:MED&resulttype=core&format=json
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29 February 2020
issue
1
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Europe PubMed Central
PMC publication ID
4327956
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25685316%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
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3
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Europe PubMed Central
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4327956
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29 February 2020
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Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities
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8 July 2018
Natural selection on protein-coding genes in the human genome
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8 July 2018
Explosive lineage-specific expansion of the orphan nuclear receptor HNF4 in nematodes
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8 July 2018
Functional evolution of the vertebrate Myb gene family: B-Myb, but neither A-Myb nor c-Myb, complements Drosophila Myb in hemocytes
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8 July 2018
Alternative splicing of mouse transcription factors affects their DNA-binding domain architecture and is tissue specific
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8 July 2018
Time's arrow: heterochrony and the evolution of development
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8 July 2018
Molecular evolution of FOXP2, a gene involved in speech and language
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8 July 2018
A Twist in fate: evolutionary comparison of Twist structure and function
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
8 July 2018
Perspective: Evolutionary developmental biology and the problem of variation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
8 July 2018
Unified nomenclature for the winged helix/forkhead transcription factors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
8 July 2018
Preservation of duplicate genes by complementary, degenerative mutations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
8 July 2018
The nuclear receptor superfamily has undergone extensive proliferation and diversification in nematodes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
8 July 2018
Two distinct types of repression domain in engrailed: one interacts with the groucho corepressor and is preferentially active on integrated target genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
8 July 2018
A conserved region of engrailed, shared among all en-, gsc-, Nk1-, Nk2- and msh-class homeoproteins, mediates active transcriptional repression in vivo
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
8 July 2018
Induction of ectopic eyes by targeted expression of the eyeless gene in Drosophila
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
8 July 2018
Phosphorylation of the Drosophila engrailed protein at a site outside its homeodomain enhances DNA binding
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
8 July 2018
A homologous protein-coding sequence in Drosophila homeotic genes and its conservation in other metazoans.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
8 July 2018
Repetitive and Non-Repetitive DNA Sequences and a Speculation on the Origins of Evolutionary Novelty
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
8 July 2018
Defining the sequence specificity of DNA-binding proteins by selecting binding sites from random-sequence oligonucleotides: analysis of yeast GCN4 protein
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
8 July 2018
The structural and functional organization of the murine HOX gene family resembles that of Drosophila homeotic genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
8 July 2018
DNA specificity of the bicoid activator protein is determined by homeodomain recognition helix residue 9
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
8 July 2018
Drosophila doublesex gene controls somatic sexual differentiation by producing alternatively spliced mRNAs encoding related sex-specific polypeptides.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
8 July 2018
Human Hox-4.2 and Drosophila deformed encode similar regulatory specificities in Drosophila embryos and larvae.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
8 July 2018
Diversification of transcription factor paralogs via noncanonical modularity in C2H2 zinc finger DNA binding
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
27 September 2018
Evolution of transcriptional enhancers and animal diversity.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
27 September 2018
Emergence and diversification of fly pigmentation through evolution of a gene regulatory module
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
27 September 2018
FoxP2 regulates neurogenesis during embryonic cortical development.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
27 September 2018
Coral comparative genomics reveal expanded Hox cluster in the cnidarian-bilaterian ancestor
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
27 September 2018
Regulatory evolution through divergence of a phosphoswitch in the transcription factor CEBPB.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
27 September 2018
A conserved gene regulatory network subcircuit drives different developmental fates in the vegetal pole of highly divergent echinoderm embryos.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
27 September 2018
Domain shuffling and the evolution of vertebrates
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
27 September 2018
Neuronal function of Tbx20 conserved from nematodes to vertebrates.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
27 September 2018
Caught in the evolutionary act: precise cis-regulatory basis of difference in the organization of gene networks of sea stars and sea urchins.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
27 September 2018
Lineage-specific expansion of the zinc finger associated domain ZAD.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
27 September 2018
Cofactor-interaction motifs and the cooption of a homeotic Hox protein into the segmentation pathway of Drosophila melanogaster
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
27 September 2018
Gene regulatory network growth by duplication
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
27 September 2018
Drosophila atonal fully rescues the phenotype of Math1 null mice: new functions evolve in new cellular contexts.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
27 September 2018
intersex, a gene required for female sexual development in Drosophila, is expressed in both sexes and functions together with doublesex to regulate terminal differentiation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
27 September 2018
A regulatory gene network that directs micromere specification in the sea urchin embryo.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
27 September 2018
Hox protein mutation and macroevolution of the insect body plan
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
27 September 2018
ske-T, a T-box gene expressed in the skeletogenic mesenchyme lineage of the sea urchin embryo.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
27 September 2018
A role for phosphorylation by casein kinase II in modulating Antennapedia activity in Drosophila.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4327956
retrieved
27 September 2018
Molecular phylogeny of the ETS gene family
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25685316
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1186/2041-9139-6-3
1 reference
stated in
Europe PubMed Central
PMC publication ID
4327956
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25685316%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
Dimensions Publication ID
1049718889
0 references
PMC publication ID
4327956
1 reference
stated in
Europe PubMed Central
PMC publication ID
4327956
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25685316%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
PubMed publication ID
25685316
1 reference
stated in
Europe PubMed Central
PMC publication ID
4327956
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25685316%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
ResearchGate publication ID
272421953
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