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Evolution of transcriptional enhancers and animal diversity.
scientific article published on 11 November 2013
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scholarly article
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Europe PubMed Central
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3826491
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24218630%20AND%20SRC:MED&resulttype=core&format=json
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29 February 2020
title
Evolution of transcriptional enhancers and animal diversity
(English)
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Europe PubMed Central
PMCID
3826491
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24218630%20AND%20SRC:MED&resulttype=core&format=json
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29 February 2020
main subject
biodiversity
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inferred from title
animal diversity
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based on heuristic
inferred from title
author
Flavio S J de Souza
series ordinal
2
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Europe PubMed Central
PMCID
3826491
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24218630%20AND%20SRC:MED&resulttype=core&format=json
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29 February 2020
author name string
Marcelo Rubinstein
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1
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Europe PubMed Central
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3826491
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24218630%20AND%20SRC:MED&resulttype=core&format=json
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English
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publication date
11 November 2013
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3826491
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29 February 2020
published in
Philosophical Transactions of the Royal Society B
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Europe PubMed Central
PMCID
3826491
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24218630%20AND%20SRC:MED&resulttype=core&format=json
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29 February 2020
volume
368
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Europe PubMed Central
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3826491
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24218630%20AND%20SRC:MED&resulttype=core&format=json
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29 February 2020
issue
1632
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Europe PubMed Central
PMCID
3826491
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24218630%20AND%20SRC:MED&resulttype=core&format=json
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29 February 2020
page(s)
20130017
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Europe PubMed Central
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3826491
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29 February 2020
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Role of a polymorphism in a Hox/Pax-responsive enhancer in the evolution of the vertebrate spine
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Shadow enhancers foster robustness of Drosophila gastrulation
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Mediator and cohesin connect gene expression and chromatin architecture
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27 May 2018
Phenotypic robustness conferred by apparently redundant transcriptional enhancers
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27 May 2018
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27 May 2018
Homotypic clusters of transcription factor binding sites are a key component of human promoters and enhancers
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Structural rules and complex regulatory circuitry constrain expression of a Notch- and EGFR-regulated eye enhancer
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Conserved expression without conserved regulatory sequence: the more things change, the more they stay the same
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Long-range gene regulation links genomic type 2 diabetes and obesity risk regions to HHEX, SOX4, and IRX3
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Stepwise modification of a modular enhancer underlies adaptation in a Drosophila population
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Human-specific transcriptional regulation of CNS development genes by FOXP2
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Evolving enhancer-promoter interactions within the tinman complex of the flour beetle, Tribolium castaneum
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Histone modifications at human enhancers reflect global cell-type-specific gene expression
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
ChIP-seq accurately predicts tissue-specific activity of enhancers
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Lactose digestion and the evolutionary genetics of lactase persistence
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Regulation of a remote Shh forebrain enhancer by the Six3 homeoprotein
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Human-specific gain of function in a developmental enhancer
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Shadow enhancers as a source of evolutionary novelty
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Sepsid even-skipped enhancers are functionally conserved in Drosophila despite lack of sequence conservation
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Organization of conserved elements near key developmental regulators in vertebrate genomes
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Regulatory divergence modifies limb length between mammals
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Ancient exaptation of a CORE-SINE retroposon into a highly conserved mammalian neuronal enhancer of the proopiomelanocortin gene
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Deletion of ultraconserved elements yields viable mice
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
The genetic basis of adaptive pigmentation variation in Drosophila melanogaster
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Functional diversification of sonic hedgehog paralog enhancers identified by phylogenomic reconstruction
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
The frailty of adaptive hypotheses for the origins of organismal complexity
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
The locus of evolution: evo devo and the genetics of adaptation
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
The evolutionary significance of cis-regulatory mutations
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Transcriptional noise and the fidelity of initiation by RNA polymerase II.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Convergent adaptation of human lactase persistence in Africa and Europe
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
In vivo enhancer analysis of human conserved non-coding sequences
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Close sequence comparisons are sufficient to identify human cis-regulatory elements.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Repeated morphological evolution through cis-regulatory changes in a pleiotropic gene
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Human-zebrafish non-coding conserved elements act in vivo to regulate transcription
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Initial sequence of the chimpanzee genome and comparison with the human genome
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Evolution at two levels: on genes and form
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Quantitative trait loci affecting the difference in pigmentation between Drosophila yakuba and D. santomea
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Identification of neuronal enhancers of the proopiomelanocortin gene by transgenic mouse analysis and phylogenetic footprinting
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Functional evolution of a cis-regulatory module
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Transcriptional enhancers: Intelligent enhanceosomes or flexible billboards?
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Highly conserved non-coding sequences are associated with vertebrate development
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Applied bioinformatics for the identification of regulatory elements
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Ultraconserved Elements in the Human Genome
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Genetic and developmental basis of evolutionary pelvic reduction in threespine sticklebacks
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Scanning Human Gene Deserts for Long-Range Enhancers
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Initial sequencing and comparative analysis of the mouse genome
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Enhanceosomes
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PubMed Central
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27 May 2018
The proopiomelanocortin system
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PubMed Central
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27 May 2018
Divergence of larval morphology between Drosophila sechellia and its sibling species caused by cis-regulatory evolution of ovo/shaven-baby
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Analysis of mammalian central nervous system gene expression and function using bacterial artificial chromosome-mediated transgenesis
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Evidence for stabilizing selection in a eukaryotic enhancer element.
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PubMed Central
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27 May 2018
Modification of expression and cis-regulation of Hoxc8 in the evolution of diverged axial morphology
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
The eve stripe 2 enhancer employs multiple modes of transcriptional synergy
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27 May 2018
Expression of a β-globin gene is enhanced by remote SV40 DNA sequences
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
Gene Regulation for Higher Cells: A Theory
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27 May 2018
Simplicity of mammalian regulatory systems.
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27 May 2018
Embryonic epsilon and gamma globin genes of a prosimian primate (Galago crassicaudatus). Nucleotide and amino acid sequences, developmental regulation and phylogenetic footprints.
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27 May 2018
Endogenous retroviral sequences are required for tissue-specific expression of a human salivary amylase gene
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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27 May 2018
stated in
Crossref
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21 January 2018
Evolution at two levels in humans and chimpanzees
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27 May 2018
A fast-evolving human NPAS3 enhancer gained reporter expression in the developing forebrain of transgenic mice
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16 August 2018
Emergence and diversification of fly pigmentation through evolution of a gene regulatory module
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16 August 2018
An integrated holo-enhancer unit defines tissue and gene specificity of the Fgf8 regulatory landscape.
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16 August 2018
Hoxd13 contribution to the evolution of vertebrate appendages
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16 August 2018
Making limbs from fins.
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16 August 2018
Mice lacking a Myc enhancer that includes human SNP rs6983267 are resistant to intestinal tumors.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3826491
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16 August 2018
Evidence for a myotomal Hox/Myf cascade governing nonautonomous control of rib specification within global vertebral domains.
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16 August 2018
Axial patterning in snakes and caecilians: evidence for an alternative interpretation of the Hox code.
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16 August 2018
The evolution of gene regulation underlies a morphological difference between two Drosophila sister species.
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16 August 2018
Morphological evolution through multiple cis-regulatory mutations at a single gene.
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16 August 2018
Cooperation of sonic hedgehog enhancers in midline expression.
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16 August 2018
Reversal of Hox1 gene subfunctionalization in the mouse.
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16 August 2018
Regulation of body pigmentation by the Abdominal-B Hox protein and its gain and loss in Drosophila evolution
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16 August 2018
A functional screen for sonic hedgehog regulatory elements across a 1 Mb interval identifies long-range ventral forebrain enhancers.
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16 August 2018
Enhancer sequence conservation between vertebrates is favoured in developmental regulator genes.
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16 August 2018
Elimination of a long-range cis-regulatory module causes complete loss of limb-specific Shh expression and truncation of the mouse limb.
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16 August 2018
A transgenic marker for newly born granule cells in dentate gyrus.
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16 August 2018
Functional analysis of chicken Sox2 enhancers highlights an array of diverse regulatory elements that are conserved in mammals.
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16 August 2018
Evolution of a tissue-specific silencer underlies divergence in the expression of pax2 and pax8 paralogues
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Knockout mice created by TALEN-mediated gene targeting
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Regulation of amylase gene expression in diabetic mice is mediated by a cis-acting upstream element close to the pancreas-specific enhancer
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Conservation of RET regulatory function from human to zebrafish without sequence similarity
1 reference
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12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1098/RSTB.2013.0017
1 reference
stated in
Europe PubMed Central
PMCID
3826491
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24218630%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
PMCID
3826491
1 reference
stated in
Europe PubMed Central
PMCID
3826491
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24218630%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
PubMed ID
24218630
1 reference
stated in
Europe PubMed Central
PMCID
3826491
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24218630%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
ResearchGate publication ID
258445981
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