(Q35087053)

6 August 2017

title

EDDY: a novel statistical gene set test method to detect differential genetic dependencies (English)

1 reference

6 August 2017

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2

Seungchan Kim

1 reference

6 August 2017

Sungwon Jung

1

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6 August 2017

language of work or name

English

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publication date

5 February 2014

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6 August 2017

published in

Nucleic Acids Research

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6 August 2017

volume

42

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6 August 2017

issue

7

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6 August 2017

page(s)

e60

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Creative Commons Attribution-NonCommercial 3.0 Unported

6 August 2017

copyright license

start time

10 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

Bayes' theorem

1 reference

18 June 2022

https://europepmc.org/article/PMC/3985670

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Gene set analysis methods: statistical models and methodological differences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3985670

Conserved and differential gene interactions in dynamical biological systems.

8 July 2018

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COSINE: COndition-SpecIfic sub-NEtwork identification using a global optimization method

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3985670

DDN: a caBIG® analytical tool for differential network analysis

8 July 2018

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Rewiring makes the difference

8 July 2018

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Principal network analysis: identification of subnetworks representing major dynamics using gene expression data

8 July 2018

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Self-contained gene-set analysis of expression data: an evaluation of existing and novel methods

8 July 2018

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Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1

8 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3985670

Dissecting the dynamics of dysregulation of cellular processes in mouse mammary gland tumor

8 July 2018

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The effect of food intake on gene expression in human peripheral blood

8 July 2018

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Statistical methods for gene set co-expression analysis

8 July 2018

1 reference

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Identification of differentially expressed subnetworks based on multivariate ANOVA.

8 July 2018

1 reference

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Analysis of gene sets based on the underlying regulatory network

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3985670

Identification of differential gene pathways with principal component analysis

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3985670

Detecting intergene correlation changes in microarray analysis: a new approach to gene selection

8 July 2018

1 reference

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Differential dependency network analysis to identify condition-specific topological changes in biological networks

8 July 2018

1 reference

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Microarray-based gene set analysis: a comparison of current methods

8 July 2018

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Differential coexpression analysis using microarray data and its application to human cancer

8 July 2018

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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

8 July 2018

1 reference

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Conserved patterns of protein interaction in multiple species

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3985670

A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments

8 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3985670

Evolutionary plasticity of genetic interaction networks

8 July 2018

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Cross-species common regulatory network inference without requirement for prior gene affiliation

21 January 2018

1 reference

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A statistical method for identifying differential gene-gene co-expression patterns

21 January 2018

1 reference

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Edge-based scoring and searching method for identifying condition-responsive protein-protein interaction sub-network

21 January 2018

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Divergence measures based on the Shannon entropy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU099

21 January 2018

Identifiers

DOI

10.1093/NAR/GKU099

1 reference

6 August 2017

1 reference

6 August 2017

1 reference