(Q35089385)

6 August 2017

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title

Function prediction and protein networks (English)

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protein function prediction

6 August 2017

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author

Peer Bork

series ordinal

4

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6 August 2017

2

Berend Snel

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Martijn A Huynen

object named as

Martijn A Huynen

series ordinal

1

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Christian von Mering

object named as

Christian von Mering

series ordinal

3

0 references

publication date

1 April 2003

1 reference

Current Opinion in Cell Biology

6 August 2017

1 reference

6 August 2017

15

1 reference

6 August 2017

191-198

1 reference

6 August 2017

2

1 reference

Predicting function: from genes to genomes and back

6 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Functional organization of the yeast proteome by systematic analysis of protein complexes

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Detecting protein function and protein-protein interactions from genome sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Protein interaction maps for complete genomes based on gene fusion events

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Conservation of gene order: a fingerprint of proteins that physically interact

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Measuring genome evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Conservation of DNA Regulatory Motifs and Discovery of New Motifs in Microbial Genomes

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Probabilistic clustering of sequences: inferring new bacterial regulons by comparative genomics

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Computational genetics: finding protein function by nonhomology methods.

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Who's your neighbor? New computational approaches for functional genomics

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Computational methods for the prediction of protein interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Exploitation of gene context

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Predicting protein function by genomic context: quantitative evaluation and qualitative inferences

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Genes linked by fusion events are generally of the same functional category: a systematic analysis of 30 microbial genomes

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

STRING: a database of predicted functional associations between proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Identifying functional links between genes using conserved chromosomal proximity

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

The KEGG databases at GenomeNet

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Comparative assessment of large-scale data sets of protein-protein interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Protein function in the post-genomic era.

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Friedreich's ataxia: autosomal recessive disease caused by an intronic GAA triplet repeat expansion

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

The phylogenetic distribution of frataxin indicates a role in iron-sulfur cluster protein assembly

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

The yeast frataxin homolog Yfh1p plays a specific role in the maturation of cellular Fe/S proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Inhibition of Fe-S cluster biosynthesis decreases mitochondrial iron export: evidence that Yfh1p affects Fe-S cluster synthesis

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

A non-essential function for yeast frataxin in iron-sulfur cluster assembly

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Lethality and centrality in protein networks

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Evolutionary rate in the protein interaction network

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

The large-scale organization of metabolic networks

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Scale-free networks in biology: new insights into the fundamentals of evolution?

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Specificity and stability in topology of protein networks

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Potential artefacts in protein-interaction networks

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

The identification of functional modules from the genomic association of genes

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Connected gene neighborhoods in prokaryotic genomes

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Hierarchical organization of modularity in metabolic networks

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Revealing modular organization in the yeast transcriptional network.

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Conservation of gene co-regulation in prokaryotes and eukaryotes

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Identification of the human methylmalonyl-CoA racemase gene based on the analysis of prokaryotic gene arrangements. Implications for decoding the human genome

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Identification of a DNA nonhomologous end-joining complex in bacteria

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

A global analysis of Caenorhabditis elegans operons

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

The human transcriptome map: clustering of highly expressed genes in chromosomal domains

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Clustering of housekeeping genes provides a unified model of gene order in the human genome

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Conservation of gene co-regulation in prokaryotes and eukaryotes.

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Natural selection promotes the conservation of linkage of co-expressed genes

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

The COG database: new developments in phylogenetic classification of proteins from complete genomes

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Transcriptional regulatory networks in Saccharomyces cerevisiae

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Network motifs: simple building blocks of complex networks

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

1 reference

7 January 2021

Membrane sequestration of the signal transduction protein GlnK by the ammonium transporter AmtB.

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

In vitro conversion of propionate to pyruvate by Salmonella enterica enzymes: 2-methylcitrate dehydratase (PrpD) and aconitase Enzymes catalyze the conversion of 2-methylcitrate to 2-methylisocitrate

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Archaeal shikimate kinase, a new member of the GHMP-kinase family

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Identification of coenzyme M biosynthetic 2-phosphosulfolactate phosphatase

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Biosynthesis of terpenoids: YchB protein of Escherichia coli phosphorylates the 2-hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA).

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

An alternative flavin-dependent mechanism for thymidylate synthesis

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Biosynthesis of terpenoids: YgbB protein converts 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate to 2C-methyl-D-erythritol 2,4-cyclodiphosphate

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

Selenoprotein R is a zinc-containing stereo-specific methionine sulfoxide reductase

1 reference

https://api.crossref.org/works/10.1016%2FS0955-0674%2803%2900009-7

7 January 2021

10.1016/S0955-0674(03)00009-7

Identifiers

DOI

1 reference

6 August 2017

1 reference

PubMed ID

12648675