(Q35093642)

6 August 2017

title

De novo reconstruction of consensus master genomes of plant RNA and DNA viruses from siRNAs (English)

1 reference

6 August 2017

Mikhail M Pooggin

9

0 references

Nachelli Malpica-López

object named as

Nachelli Malpica-López

3

0 references

Valerian V Dolja

6

object named as

Valerian V Dolja

1 reference

6 August 2017

Jonathan Seguin

1

1 reference

6 August 2017

Rajendran Rajeswaran

2

1 reference

6 August 2017

Robert R Martin

4

1 reference

6 August 2017

Kristin Kasschau

5

1 reference

6 August 2017

Patricia Otten

7

1 reference

6 August 2017

Laurent Farinelli

8

1 reference

6 August 2017

language of work or name

English

0 references

publication date

11 February 2014

1 reference

6 August 2017

1 reference

6 August 2017

volume

9

1 reference

6 August 2017

issue

2

1 reference

6 August 2017

page(s)

e88513

1 reference

Creative Commons CC0 License

6 August 2017

copyright license

start time

11 February 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

0 references

cites work

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How can plant DNA viruses evade siRNA-directed DNA methylation and silencing?

9 July 2018

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A leafhopper-transmissible DNA virus with novel evolutionary lineage in the family geminiviridae implicated in grapevine redleaf disease by next-generation sequencing

9 July 2018

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Association of a DNA virus with grapevines affected by red blotch disease in California

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3921208

Primary and secondary siRNAs in geminivirus-induced gene silencing

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3921208

MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3921208

Identification of a single-stranded DNA virus associated with citrus chlorotic dwarf disease, a new member in the family Geminiviridae.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3921208

Complete genome sequence of a new circular DNA virus from grapevine

9 July 2018

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Viral quasispecies evolution

9 July 2018

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Deep sequencing of small RNAs in tomato for virus and viroid identification and strain differentiation

9 July 2018

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9 July 2018

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Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels

9 July 2018

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Homology-independent discovery of replicating pathogenic circular RNAs by deep sequencing and a new computational algorithm

9 July 2018

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Complete genome sequence of a potyvirus infecting yam beans (Pachyrhizus spp.) in Peru

9 July 2018

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A new grapevine virus discovered by deep sequencing of virus- and viroid-derived small RNAs in Cv Pinot gris

9 July 2018

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In silico reconstruction of viral genomes from small RNAs improves virus-derived small interfering RNA profiling

9 July 2018

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Association of a novel DNA virus with the grapevine vein-clearing and vine decline syndrome.

9 July 2018

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Massive production of small RNAs from a non-coding region of Cauliflower mosaic virus in plant defense and viral counter-defense

9 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3921208

Sequence characterization of a Peruvian isolate of Sweet potato chlorotic stunt virus: further variability and a model for p22 acquisition.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3921208

Virus-derived small interfering RNAs at the core of plant-virus interactions

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3921208

Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs.

9 July 2018

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Fast and accurate short read alignment with Burrows-Wheeler transform

9 July 2018

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Validation of high rates of nucleotide substitution in geminiviruses: phylogenetic evidence from East African cassava mosaic viruses

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3921208

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3921208

Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3921208

Four plant Dicers mediate viral small RNA biogenesis and DNA virus induced silencing

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3921208

Viroids: a light in the darkness of the lncRNA-directed regulatory networks in plants

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3921208

Virus-derived gene expression and RNA interference vector for grapevine

27 September 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3921208

The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci

27 September 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3921208

Deep-sequencing of plant viral small RNAs reveals effective and widespread targeting of viral genomes.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3921208

Deep sequencing analysis of RNAs from a grapevine showing Syrah decline symptoms reveals a multiple virus infection that includes a novel virus

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3921208

Chimeras between oilseed rape mosaic virus and tobacco mosaic virus highlight the relevant role of the tobamoviral RdRp as pathogenicity determinant in several hosts.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3921208

Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of viruses

27 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0088513

Using small RNA sequences to diagnose, sequence, and investigate the infectivity characteristics of vegetable-infecting viruses

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24523907

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Accurate and sensitive diagnosis of geminiviruses through enrichment, high-throughput sequencing and automated sequence identification

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24523907

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0088513

1 reference

6 August 2017

0 references

1 reference

6 August 2017

1 reference