(Q35101822)

6 August 2017

title

Detection and classification of peaks in 5' cap RNA sequencing data (English)

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6 August 2017

Dario Strbenac

1

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6 August 2017

Nicola J Armstrong

series ordinal

2

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6 August 2017

Jean Y H Yang

series ordinal

3

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6 August 2017

language of work or name

English

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publication date

16 October 2013

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6 August 2017

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6 August 2017

volume

14 Suppl 5

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6 August 2017

page(s)

S9

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On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE

6 August 2017

cites work

1 reference

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GABP transcription factor is required for development of chronic myelogenous leukemia via its control of PRKD2

9 July 2018

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Regional activation of the cancer genome by long-range epigenetic remodeling

9 July 2018

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9 July 2018

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Landscape of transcription in human cells

9 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852351

Unsupervised pattern discovery in human chromatin structure through genomic segmentation

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852351

5' end-centered expression profiling using cap-analysis gene expression and next-generation sequencing

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852351

Promoter architecture of mouse olfactory receptor genes

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852351

An integrated ChIP-seq analysis platform with customizable workflows

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852351

Shape-based peak identification for ChIP-Seq

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852351

Evaluation of algorithm performance in ChIP-seq peak detection

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852351

RNA dust: where are the genes?

9 July 2018

1 reference

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An atlas of combinatorial transcriptional regulation in mouse and man

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852351

The logic of chromatin architecture and remodelling at promoters

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852351

Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852351

The regulated retrotransposon transcriptome of mammalian cells

9 July 2018

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852351

Identification of a cytoplasmic complex that adds a cap onto 5'-monophosphate RNA

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852351

PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852351

Model-based analysis of ChIP-Seq (MACS)

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852351

F-Seq: a feature density estimator for high-throughput sequence tags

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852351

Mapping short DNA sequencing reads and calling variants using mapping quality scores

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852351

Global transcription in pluripotent embryonic stem cells.

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852351

A code for transcription initiation in mammalian genomes

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852351

Genome-wide analysis of mammalian promoter architecture and evolution

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852351

Bioconductor: open software development for computational biology and bioinformatics

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852351

Dissecting the human BDNF locus: bidirectional transcription, complex splicing, and multiple promoters

9 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852351

ARTS: accurate recognition of transcription starts in human

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3852351

10.1186/1471-2164-14-S5-S9

27 September 2018

Identifiers

DOI

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Dimensions Publication ID

6 August 2017

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6 August 2017

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