(Q35132077)

6 August 2017

title

Footprints of directional selection in wild Atlantic salmon populations: evidence for parasite-driven evolution? (English)

1 reference

6 August 2017

6

1 reference

6 August 2017

Ksenia J Zueva

1

1 reference

6 August 2017

Jaakko Lumme

2

1 reference

6 August 2017

Alexey E Veselov

3

1 reference

6 August 2017

Matthew P Kent

4

1 reference

6 August 2017

Sigbjørn Lien

5

1 reference

6 August 2017

language of work or name

English

0 references

publication date

26 March 2014

1 reference

6 August 2017

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6 August 2017

volume

9

1 reference

6 August 2017

issue

3

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6 August 2017

page(s)

e91672

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Creative Commons Attribution 4.0 International

6 August 2017

copyright license

start time

26 March 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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SNP-array reveals genome-wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon (Salmo salar).

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Genomic arrangement of salinity tolerance QTLs in salmonids: a comparative analysis of Atlantic salmon (Salmo salar) with Arctic charr (Salvelinus alpinus) and rainbow trout (Oncorhynchus mykiss).

13 July 2018

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Genome-wide analysis of the world's sheep breeds reveals high levels of historic mixture and strong recent selection

13 July 2018

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A dense SNP-based linkage map for Atlantic salmon (Salmo salar) reveals extended chromosome homeologies and striking differences in sex-specific recombination patterns

13 July 2018

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Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping

13 July 2018

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The genetic basis of salinity tolerance traits in Arctic charr (Salvelinus alpinus).

13 July 2018

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Population genomics of wild and laboratory zebrafish (Danio rerio)

13 July 2018

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Detection of QTL with effects on osmoregulation capacities in the rainbow trout (Oncorhynchus mykiss).

13 July 2018

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Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

13 July 2018

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Inferring weak population structure with the assistance of sample group information

13 July 2018

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The coupling hypothesis: why genome scans may fail to map local adaptation genes.

13 July 2018

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Major histocompatibility complex polymorphism: dynamics and consequences of parasite-mediated local adaptation in fishes

13 July 2018

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Sequencing the genome of the Atlantic salmon (Salmo salar).

13 July 2018

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A review of the likely effects of climate change on anadromous Atlantic salmonSalmo salarand brown troutSalmo trutta, with particular reference to water temperature and flow

13 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966780

Proteomic profiling of early life stages of European grayling (Thymallus thymallus).

13 July 2018

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A unified model for the coevolution of resistance, tolerance, and virulence.

13 July 2018

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Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags

13 July 2018

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Genome-wide scans for footprints of natural selection

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966780

Confirmation and fine-mapping of a major QTL for resistance to infectious pancreatic necrosis in Atlantic salmon (Salmo salar): population-level associations between markers and trait

13 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966780

Detecting loci under selection in a hierarchically structured population

13 July 2018

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Large-scale proteomic analysis of tyrosine-phosphorylation induced by T-cell receptor or B-cell receptor activation reveals new signaling pathways

13 July 2018

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Ecological feedbacks and the evolution of resistance

13 July 2018

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MHC standing genetic variation and pathogen resistance in wild Atlantic salmon

13 July 2018

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Evidence for directional selection at a novel major histocompatibility class I marker in wild common frogs (Rana temporaria) exposed to a viral pathogen (Ranavirus).

13 July 2018

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ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

13 July 2018

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Harnessing genomics for evolutionary insights

13 July 2018

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Characterising functionally important and ecologically meaningful genetic diversity using a candidate gene approach.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966780

Some insights into energy metabolism for osmoregulation in fish

13 July 2018

1 reference

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Identifying selected regions from heterozygosity and divergence using a light-coverage genomic dataset from two human populations

13 July 2018

1 reference

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Stress granules: the Tao of RNA triage

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966780

Major quantitative trait loci affect resistance to infectious pancreatic necrosis in Atlantic salmon (Salmo salar).

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966780

Interpopulation differences in expression of candidate genes for salinity tolerance in winter migrating anadromous brown trout (Salmo trutta L.).

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966780

Fission yeast mitogen-activated protein kinase Sty1 interacts with translation factors

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966780

New advances in fatty acids as antimalarial, antimycobacterial and antifungal agents

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966780

Disentangling genetic variation for resistance and tolerance to infectious diseases in animals

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966780

Clinal variation in MHC diversity with temperature: evidence for the role of host-pathogen interaction on local adaptation in Atlantic salmon

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966780

PLINK: a tool set for whole-genome association and population-based linkage analyses

13 July 2018

1 reference

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eIF3: a versatile scaffold for translation initiation complexes

13 July 2018

1 reference

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13 July 2018

1 reference

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13 July 2018

1 reference

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Genomic scans for selective sweeps using SNP data

13 July 2018

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13 July 2018

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13 July 2018

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13 July 2018

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PCI proteins eIF3e and eIF3m define distinct translation initiation factor 3 complexes

13 July 2018

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13 July 2018

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Identification of immune-relevant genes from atlantic salmon using suppression subtractive hybridization

13 July 2018

1 reference

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13 July 2018

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13 July 2018

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A putative RUNX1 binding site variant between SLC9A3R1 and NAT9 is associated with susceptibility to psoriasis

13 July 2018

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Cytoscape: a software environment for integrated models of biomolecular interaction networks

13 July 2018

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Natural selection drives Drosophila immune system evolution.

13 July 2018

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13 July 2018

1 reference

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13 July 2018

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13 July 2018

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13 July 2018

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13 July 2018

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13 July 2018

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Ten years of protein kinase B signalling: a hard Akt to follow

13 July 2018

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13 July 2018

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13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966780

Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966780

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13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966780

The hitch-hiking effect of a favourable gene

13 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966780

13 July 2018

12 December 2020

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966780

On the evolutionary ecology of host-parasite interactions: addressing the question with regard to bumblebees and their parasites.

28 July 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

Experimental evidence for major histocompatibility complex-allele-specific resistance to a bacterial infection.

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

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21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

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21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

Genome-wide survey of the gene expression response to saprolegniasis in Atlantic salmon

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

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21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

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21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

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21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

PowerMarker: an integrated analysis environment for genetic marker analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

Identifying footprints of directional and balancing selection in marine and freshwater three-spined stickleback (Gasterosteus aculeatus) populations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

The influence of mutation, recombination, population history, and selection on patterns of genetic diversity in Neisseria meningitidis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

Identification of genetic markers associated with Gyrodactylus salaris resistance in Atlantic salmon Salmo salar

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

Identifying adaptive genetic divergence among populations from genome scans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

Changes in ribosomal binding activity of eIF3 correlate with increased translation rates during activation of T lymphocytes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

Moe1 and spInt6, the fission yeast homologues of mammalian translation initiation factor 3 subunits p66 (eIF3d) and p48 (eIF3e), respectively, are required for stable association of eIF3 subunits

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

Immunoregulatory and anti-inflammatory effects of n-3 polyunsaturated fatty acids.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

Molecular and immunohistochemical studies on epidermal responses in Atlantic salmon Salmo salar L. induced by Gyrodactylus salaris Malmberg, 1957.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

Skin expression of IL-1beta in East Atlantic salmon, Salmo salar L., highly susceptible to Gyrodactylus salaris infection is enhanced compared to a low susceptibility Baltic stock

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

The effects of arachidonic acid on the endocrine and osmoregulatory response of tilapia (Oreochromis mossambicus) acclimated to seawater and subjected to confinement stress.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

Salinity- and population-dependent genome regulatory response during osmotic acclimation in the killifish (Fundulus heteroclitus) gill

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

A proteomics approach reveals divergent molecular responses to salinity in populations of European whitefish (Coregonus lavaretus).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

Sodium-hydrogen exchanger regulatory factor-1 interacts with mouse urate transporter 1 to regulate renal proximal tubule uric acid transport.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

Identifying putative candidate genes and pathways involved in immune responses to porcine reproductive and respiratory syndrome virus (PRRSV) infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

Marine landscapes and population genetic structure of herring (Clupea harengus L.) in the Baltic Sea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

ESTIMATING F-STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966780

Enhanced photosynthesis and redox energy production contribute to salinity tolerance in Dunaliella as revealed by homology-based proteomics

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966780

Influence of dietary supplementation with long-chain n-3 or n-6 polyunsaturated fatty acids on blood inflammatory cell populations and functions and on plasma soluble adhesion molecules in healthy adults.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3966780

Disentangling the roles of natural selection and genetic drift in shaping variation at MHC immunity genes

27 September 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

Beyond MHC: signals of elevated selection pressure on Atlantic salmon (Salmo salar) immune-relevant loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

Expressed Sequence Tag-Linked Microsatellites as a Source of Gene-Associated Polymorphisms for Detecting Signatures of Divergent Selection in Atlantic Salmon (Salmo salar L.)

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

Genetic structure of freshwater Atlantic salmon (Salmo salar L.) populations from the lakes Onega and Ladoga of northwest Russia and implications for conservation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

Microsatellites reveal clear genetic boundaries among Atlantic salmon (Salmo salar) populations from the Barents and White seas, northwest Russia

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0091672

Is MHC enough for understanding wildlife immunogenetics?

21 January 2018

1 reference

12 December 2020

Enhanced hypo-osmoregulation induced by warm-acclimation in antarctic fish is mediated by increased gill and kidney Na+/K(+)-ATPase activities

1 reference

12 December 2020

Reciprocal expression of gill Na+/K+-ATPase alpha-subunit isoforms alpha1a and alpha1b during seawater acclimation of three salmonid fishes that vary in their salinity tolerance

1 reference

12 December 2020

Identification of genes differentially expressed in Atlantic salmon (Salmo salar) in response to infection by Aeromonas salmonicida using cDNA microarray technology

1 reference

12 December 2020

Natural selection at major histocompatibility complex loci of vertebrates

1 reference

12 December 2020

How specific MHC class I and class II combinations affect disease resistance against infectious salmon anaemia in Atlantic salmon (Salmo salar)

1 reference

12 December 2020

A standardized genetic differentiation measure

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0091672

Identifiers

DOI

1 reference

6 August 2017

0 references

1 reference

6 August 2017

1 reference