(Q35173342)

6 August 2017

title

Direct tests of the energetic basis of abortive cycling in transcription (English)

1 reference

6 August 2017

Ankit V Vahia

1

1 reference

6 August 2017

Craig T Martin

series ordinal

2

1 reference

6 August 2017

language of work or name

English

0 references

publication date

21 July 2011

1 reference

6 August 2017

number of pages

8

1 reference

inferred from page(s)

published in

Biochemistry

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6 August 2017

volume

50

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6 August 2017

issue

32

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6 August 2017

page(s)

7015-7022

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Real-time observation of the transition from transcription initiation to elongation of the RNA polymerase

6 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

Transcription elongation complex stability: the topological lock

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

Direct detection of abortive RNA transcripts in vivo

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

The structure of a transcribing T7 RNA polymerase in transition from initiation to elongation

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

Transcription initiation in a single-subunit RNA polymerase proceeds through DNA scrunching and rotation of the N-terminal subdomains.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

Twisted or shifted? Fluorescence measurements of late intermediates in transcription initiation by T7 RNA polymerase

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

Direct observation of abortive initiation and promoter escape within single immobilized transcription complexes.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

Structure and function in promoter escape by T7 RNA polymerase

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

A mutation in T7 RNA polymerase that facilitates promoter clearance

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

Initial bubble collapse plays a key role in the transition to elongation in T7 RNA polymerase

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

Binding of the priming nucleotide in the initiation of transcription by T7 RNA polymerase

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

T7 promoter release mediated by DNA scrunching

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

Pre-steady-state kinetics of initiation of transcription by T7 RNA polymerase: a new kinetic model

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

Structure of a transcribing T7 RNA polymerase initiation complex

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

Transcription regulation, initiation, and "DNA scrunching" by T7 RNA polymerase

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

Structural basis for initiation of transcription from an RNA polymerase-promoter complex

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

Identification of a minimal binding element within the T7 RNA polymerase promoter

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

An Escherichia coli RNA polymerase defective in transcription due to its overproduction of abortive initiation products

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

Interactions of the RNA polymerase of bacteriophage T7 with its promoter during binding and initiation of transcription

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

Processivity in early stages of transcription by T7 RNA polymerase

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

A stressed intermediate in the formation of stably initiated RNA chains at the Escherichia coli lac UV5 promoter.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

Interaction of RNA polymerase with lacUV5 promoter DNA during mRNA initiation and elongation. Footprinting, methylation, and rifampicin-sensitivity changes accompanying transcription initiation.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

Transcript elongation and termination are competitive kinetic processes

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

Observed instability of T7 RNA polymerase elongation complexes can be dominated by collision-induced "bumping".

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

Promoter clearance by T7 RNA polymerase. Initial bubble collapse and transcript dissociation monitored by base analog fluorescence

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

An integrated model of the transcription complex in elongation, termination, and editing

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3159029

Cycling of ribonucleic acid polymerase to produce oligonucleotides during initiation in vitro at the lac UV5 promoter

27 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21776950

12 December 2020

inferred from PubMed ID database lookup

Positioning of the start site in the initiation of transcription by bacteriophage T7 RNA polymerase

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21776950

12 December 2020

inferred from PubMed ID database lookup

Interrupting the template strand of the T7 promoter facilitates translocation of the DNA during initiation, reducing transcript slippage and the release of abortive products

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21776950

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1021/BI200620Q

1 reference

6 August 2017

1 reference

6 August 2017

1 reference