(Q35189594)

7 August 2017

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title

Structural characterization of the Fpg family of DNA glycosylases (English)

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7 August 2017

Dmitry O Zharkov

1

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7 August 2017

Gil Shoham

series ordinal

2

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7 August 2017

Arthur P Grollman

series ordinal

3

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7 August 2017

publication date

1 August 2003

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7 August 2017

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7 August 2017

volume

2

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7 August 2017

issue

8

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7 August 2017

page(s)

839-862

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Instability and decay of the primary structure of DNA

7 August 2017

cites work

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7 January 2021

The mechanism of switching among multiple BER pathways.

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7 January 2021

DNA glycosylases in the base excision repair of DNA

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7 January 2021

The catalytic mechanism of Fpg protein. Evidence for a Schiff base intermediate and amino terminus localization of the catalytic site

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7 January 2021

Enzyme Structures: DNA repair flips out

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7 January 2021

HhaI methyltransferase flips its target base out of the DNA helix

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7 January 2021

Lessons learned from structural results on uracil-DNA glycosylase

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7 January 2021

A phylogenomic study of DNA repair genes, proteins, and processes

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7 January 2021

Conserved domains in DNA repair proteins and evolution of repair systems

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7 January 2021

Atomic structure of the DNA repair [4Fe-4S] enzyme endonuclease III

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7 January 2021

Novel DNA binding motifs in the DNA repair enzyme endonuclease III crystal structure

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7 January 2021

Cloning of a yeast 8-oxoguanine DNA glycosylase reveals the existence of a base-excision DNA-repair protein superfamily

1 reference

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7 January 2021

Cloning and expression in Escherichia coli of the OGG1 gene of Saccharomyces cerevisiae, which codes for a DNA glycosylase that excises 7,8-dihydro-8-oxoguanine and 2,6-diamino-4-hydroxy-5-N-methylformamidopyrimidine

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7 January 2021

Substrate specificity and reaction mechanism of murine 8-oxoguanine-DNA glycosylase

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7 January 2021

Characterization of the Escherichia coli X-ray endonuclease, endonuclease III.

1 reference

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7 January 2021

MutY, an adenine glycosylase active on G-A mispairs, has homology to endonuclease III.

1 reference

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7 January 2021

Role of MED1 (MBD4) Gene in DNA repair and human cancer

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7 January 2021

Cloning of Escherichia coli genes encoding 3-methyladenine DNA glycosylases I and II

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7 January 2021

Purification and cloning of Micrococcus luteus ultraviolet endonuclease, an N-glycosylase/abasic lyase that proceeds via an imino enzyme-DNA intermediate

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Escherichia coli endonuclease VIII: cloning, sequencing, and overexpression of the nei structural gene and characterization of nei and nei nth mutants

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Characterization of endonuclease III (nth) and endonuclease VIII (nei) mutants of Escherichia coli K-12.

1 reference

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7 January 2021

Human DNA glycosylases of the bacterial Fpg/MutM superfamily: an alternative pathway for the repair of 8-oxoguanine and other oxidation products in DNA

1 reference

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7 January 2021

A novel human DNA glycosylase that removes oxidative DNA damage and is homologous to Escherichia coli endonuclease VIII

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Identification and characterization of a novel human DNA glycosylase for repair of cytosine-derived lesions

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Identification and characterization of a human DNA glycosylase for repair of modified bases in oxidatively damaged DNA

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Chemistry of Glycosylases and Endonucleases Involved in Base-Excision Repair

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Characterization ofEscherichia coliEndonuclease VIII

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Comparative analysis of baseline 8-oxo-7,8-dihydroguanine in mammalian cell DNA, by different methods in different laboratories: an approach to consensus

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Fourier-transform infrared spectroscopy and gas chromatography-mass spectrometry reveal a remarkable degree of structural damage in the DNA of wild fish exposed to toxic chemicals

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Mutations in the mutY gene of Escherichia coli enhance the frequency of targeted G:C-->T:a transversions induced by a single 8-oxoguanine residue in single-stranded DNA

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Functional cooperation of MutT, MutM and MutY proteins in preventing mutations caused by spontaneous oxidation of guanine nucleotide in Escherichia coli.

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Accumulation of premutagenic DNA lesions in mice defective in removal of oxidative base damage

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Mmh/Ogg1 gene inactivation results in accumulation of 8-hydroxyguanine in mice

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

MutY catalytic core, mutant and bound adenine structures define specificity for DNA repair enzyme superfamily

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Coupling of substrate recognition and catalysis by a human base-excision DNA repair protein

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Reciprocal "flipping" underlies substrate recognition and catalytic activation by the human 8-oxo-guanine DNA glycosylase

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Thermostable repair enzyme for oxidative DNA damage from extremely thermophilic bacterium, Thermus thermophilus HB8.

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Crystallization and preliminary X-ray crystallographic studies of Thermus thermophilus HB8 MutM protein involved in repairs of oxidative DNA damage

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Crystal structure of a repair enzyme of oxidatively damaged DNA, MutM (Fpg), from an extreme thermophile, Thermus thermophilus HB8

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

NH2-terminal proline acts as a nucleophile in the glycosylase/AP-lyase reaction catalyzed by Escherichia coli formamidopyrimidine-DNA glycosylase (Fpg) protein

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

MutY DNA glycosylase: base release and intermediate complex formation

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Characterization of a cross-linked DNA-endonuclease VIII repair complex by electrospray ionization mass spectrometry

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Structural analysis of an Escherichia coli endonuclease VIII covalent reaction intermediate

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Structure of formamidopyrimidine-DNA glycosylase covalently complexed to DNA

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

DNA containing a chemically reduced apurinic site is a high affinity ligand for the E. coli formamidopyrimidine-DNA glycosylase

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Specific binding of a designed pyrrolidine abasic site analog to multiple DNA glycosylases

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

AP site structural determinants for Fpg specific recognition

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Crystal structure of the Lactococcus lactis formamidopyrimidine-DNA glycosylase bound to an abasic site analogue-containing DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Covalent trapping of protein-DNA complexes

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Spectroscopic studies of zinc(II)- and cobalt(II)-associated Escherichia coli formamidopyrimidine-DNA glycosylase: extended X-ray absorption fine structure evidence for a metal-binding domain.

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Base excision repair: NMR backbone assignments of Escherichia coli formamidopyrimidine-DNA glycosylase.

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Mapping the protein universe

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Structure prediction meta server

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Combining structural and bioinformatics methods for the analysis of functionally important residues in DNA glycosylases

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Stopped-flow kinetic studies of the interaction between Escherichia coli Fpg protein and DNA substrates

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Escherichia coli MutY and Fpg utilize a processive mechanism for target location

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Diffusion-driven mechanisms of protein translocation on nucleic acids. 2. The Escherichia coli lac repressor-operator interaction: equilibrium measurements

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions.

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

How do DNA repair proteins locate damaged bases in the genome?

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Direct visualization of a DNA glycosylase searching for damage

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Uracil-DNA glycosylase-DNA substrate and product structures: conformational strain promotes catalytic efficiency by coupled stereoelectronic effects

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Kinetic mechanism of damage site recognition and uracil flipping by Escherichia coli uracil DNA glycosylase

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

The role of base flipping in damage recognition and catalysis by T4 endonuclease V.

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

A novel nucleotide excision repair for the conversion of an A/G mismatch to C/G base pair in E. coli

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Influence of local duplex stability and N6-methyladenine on uracil recognition by mismatch-specific uracil-DNA glycosylase (Mug).

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

X-ray structure of a DNA decamer containing 7,8-dihydro-8-oxoguanine

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

NMR studies of a DNA containing 8-hydroxydeoxyguanosine

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

NMR structural studies of the ionizing radiation adduct 7-hydro-8-oxodeoxyguanosine (8-oxo-7H-dG) opposite deoxyadenosine in a DNA duplex. 8-Oxo-7H-dG(syn).dA(anti) alignment at lesion site

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Crystal structure of a DNA duplex containing 8-hydroxydeoxyguanine-adenine base pairs

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Influence of the oxidatively damaged adduct 8-oxodeoxyguanosine on the conformation, energetics, and thermodynamic stability of a DNA duplex.

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Structure of a duplex DNA containing a thymine glycol residue in solution

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Crystallization and preliminary X-ray analysis of a DNA dodecamer containing 2'-deoxy-5-formyluridine; what is the role of magnesium cation in crystallization of Dickerson-type DNA dodecamers?

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Aromatic-aromatic interaction: a mechanism of protein structure stabilization

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Synthesis of the diastereomers of thymidine glycol, determination of concentrations and rates of interconversion of their cis-trans epimers at equilibrium and demonstration of differential alkali lability within DNA

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Role of electrophilic and general base catalysis in the mechanism of Escherichia coli uracil DNA glycosylase.

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Mechanism of DNA strand nicking at apurinic/apyrimidinic sites by Escherichia coli [formamidopyrimidine]DNA glycosylase

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

3'- and 5'-strand cleavage reactions catalyzed by the Fpg protein from Escherichia coli occur via successive beta- and delta-elimination mechanisms, respectively

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Initiation of base excision repair: glycosylase mechanisms and structures

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Stereochemical studies of the beta-elimination reactions at aldehydic abasic sites in DNA: endonuclease III from Escherichia coli, sodium hydroxide, and Lys-Trp-Lys

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Product-assisted catalysis in base-excision DNA repair

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Delta-elimination by T4 endonuclease V at a thymine dimer site requires a secondary binding event and amino acid Glu-23.

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

The mechanisms of action of E. coli endonuclease III and T4 UV endonuclease (endonuclease V) at AP sites

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Evidence for an imino intermediate in the T4 endonuclease V reaction

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Molecular cloning of AtMMH, an Arabidopsis thaliana ortholog of the Escherichia coli mutM gene, and analysis of functional domains of its product.

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

A back-up glycosylase in Nth1 knock-out mice is a functional Nei (endonuclease VIII) homologue

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

The novel DNA glycosylase, NEIL1, protects mammalian cells from radiation-mediated cell death

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Alternative forms of formamidopyrimidine-DNA glycosylase from Arabidopsis thaliana

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Fold-recognition analysis predicts that the Tag protein family shares a common domain with the helix-hairpin-helix DNA glycosylases

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

3-Methyladenine DNA glycosylase I is an unexpected helix-hairpin-helix superfamily member

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

1 reference

7 January 2021

Release of 7-methylguanine residues whose imidazole rings have been opened from damaged DNA by a DNA glycosylase from Escherichla coli

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Substrate specificity of the Escherichia coli Fpg protein (formamidopyrimidine-DNA glycosylase): excision of purine lesions in DNA produced by ionizing radiation or photosensitization.

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Kinetics of excision of purine lesions from DNA by Escherichia coli Fpg protein

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Mechanism of action of base release by Escherichia coli Fpg protein: role of lysine 155 in catalysis

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

The pyrimidine ring-opened derivative of 1,N6-ethenoadenine is excised from DNA by the Escherichia coli Fpg and Nth proteins

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Peroxynitrite-induced secondary oxidative lesions at guanine nucleobases: chemical stability and recognition by the Fpg DNA repair enzyme

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

In vitro DNA synthesis opposite oxazolone and repair of this DNA damage using modified oligonucleotides

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Repair and mutagenic potential of oxaluric acid, a major product of singlet oxygen-mediated oxidation of 8-oxo-7,8-dihydroguanine.

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Fpg protein releases a ring-opened N-7 guanine adduct from DNA that has been modified by sulfur mustard

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Excision of the imidazole ring-opened form of N-2-aminofluorene-C(8)-guanine adduct in poly(dG-dC) by Escherichia coli formamidopyrimidine-DNA glycosylase.

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Excision of 5,6-dihydroxy-5,6-dihydrothymine, 5,6-dihydrothymine, and 5-hydroxycytosine from defined sequence oligonucleotides by Escherichia coli endonuclease III and Fpg proteins: kinetic and mechanistic aspects

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Enzymatic Processing of Uracil Glycol, a Major Oxidative Product of DNA Cytosine

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Repair and coding properties of 5-hydroxy-5-methylhydantoin nucleosides inserted into DNA oligomers

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Identification of repair enzymes for 5-formyluracil in DNA. Nth, Nei, and MutM proteins of Escherichia coli

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

The ring fragmentation product of thymidine C5-hydrate when present in DNA is repaired by the Escherichia coli Fpg and Nth proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

A common mechanism of action for the N-glycosylase activity of DNA N-glycosylase/AP lyases from E. coli and T4

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Isolation and characterization of endonuclease VIII from Escherichia coli.

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Substrate specificity and excision kinetics of Escherichia coli endonuclease VIII (Nei) for modified bases in DNA damaged by free radicals

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Recognition of formamidopyrimidine by Escherichia coli and mammalian thymine glycol glycosylases. Distinctive paired base effects and biological and mechanistic implications.

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

Novel repair activities of AlkA (3-methyladenine DNA glycosylase II) and endonuclease VIII for xanthine and oxanine, guanine lesions induced by nitric oxide and nitrous acid

1 reference

https://api.crossref.org/works/10.1016%2FS1568-7864%2803%2900084-3

7 January 2021

10.1016/S1568-7864(03)00084-3

Identifiers

DOI

1 reference

release_tdthjdkqjjbq7hfgxb53vasram

7 August 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/tdthjdkqjjbq7hfgxb53vasram

24 November 2022

mapped directly with Wikidata item

1 reference