(Q35189998)

25713380

7 August 2017

title

Analysis of 13 cell types reveals evidence for the expression of numerous novel primate- and tissue-specific microRNAs (English)

1 reference

7 August 2017

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1 reference

1

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4 June 2020

Aristeidis G Telonis

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Peter M Clark

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Yohei Kirino

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Michelle Lally

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Clay Comstock

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Karen E Knudsen

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Sergio A Jimenez

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Simonetta Zupo

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George A. Calin

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George A. Calin

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John S. Mattick

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Isidore Rigoutsos

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Michael A. Hollingsworth

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Michael A Hollingsworth

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4 June 2020

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Peter T Nelson

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author name string

Phillipe Loher

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4 June 2020

Kevin Quann

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Yi Jing

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Eleftheria Hatzimichael

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Shozo Honda

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Bharat Ramratnam

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Leonard Gomella

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George L Spaeth

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Lisa Hark

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L Jay Katz

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Agnieszka Witkiewicz

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Abdolmohamad Rostami

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Jen Jen Yeh

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Chad A Shaw

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Steven E McKenzie

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Michael J Keating

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Charles Yeo

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Masaya Jimbo

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Joseph Cozzitorto

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Jonathan R Brody

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4 June 2020

language of work or name

English

0 references

publication date

23 February 2015

1 reference

25713380

Proceedings of the National Academy of Sciences of the United States of America

7 August 2017

published in

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4 June 2020

volume

112

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4 June 2020

issue

10

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4 June 2020

page(s)

E1106-15

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Argonaute-dependent small RNAs derived from single-stranded, non-structured precursors

4 June 2020

cites work

1 reference

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Evidence for the biogenesis of more than 1,000 novel human microRNAs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Imperfect centered miRNA binding sites are common and can mediate repression of target mRNAs

28 July 2018

1 reference

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The human platelet: strong transcriptome correlations among individuals associate weakly with the platelet proteome.

28 July 2018

1 reference

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The miR-17/92 cluster: a comprehensive update on its genomics, genetics, functions and increasingly important and numerous roles in health and disease

28 July 2018

1 reference

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Natural RNA circles function as efficient microRNA sponges

28 July 2018

1 reference

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The complex transcriptional landscape of the anucleate human platelet

28 July 2018

1 reference

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tRNA-derived microRNA modulates proliferation and the DNA damage response and is down-regulated in B cell lymphoma.

28 July 2018

1 reference

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The repertoire and features of human platelet microRNAs

28 July 2018

1 reference

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Processing of snoRNAs as a new source of regulatory non-coding RNAs: snoRNA fragments form a new class of functional RNAs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Discovery of hundreds of mirtrons in mouse and human small RNA data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Mili and Miwi target RNA repertoire reveals piRNA biogenesis and function of Miwi in spermiogenesis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

The microRNAs within the DLK1-DIO3 genomic region: involvement in disease pathogenesis

28 July 2018

1 reference

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miRNA-mediated gene silencing by translational repression followed by mRNA deadenylation and decay

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

The viral and cellular microRNA targetome in lymphoblastoid cell lines

28 July 2018

1 reference

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Strand-specific miR-28-5p and miR-28-3p have distinct effects in colorectal cancer cells

28 July 2018

1 reference

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Evolution of microRNA diversity and regulation in animals

28 July 2018

1 reference

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A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA

28 July 2018

1 reference

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Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs

28 July 2018

1 reference

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miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Deep sequencing of small RNAs from human skin reveals major alterations in the psoriasis miRNAome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Specific sequence determinants of miR-15/107 microRNA gene group targets

28 July 2018

1 reference

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Evolution and functional diversification of MIRNA genes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

miRBase: integrating microRNA annotation and deep-sequencing data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Alu-directed transcriptional regulation of some novel miRNAs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Active turnover modulates mature microRNA activity in Caenorhabditis elegans

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

SHRiMP: accurate mapping of short color-space reads

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

New tricks for animal microRNAS: targeting of amino acid coding regions at conserved and nonconserved sites

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

MicroRNAs: target recognition and regulatory functions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

A search for conserved sequences in coding regions reveals that the let-7 microRNA targets Dicer within its coding sequence

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

MicroRNAs to Nanog, Oct4 and Sox2 coding regions modulate embryonic stem cell differentiation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Degradation of microRNAs by a family of exoribonucleases in Arabidopsis

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

The let-7 family of microRNAs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

MicroRNA-126 regulates HOXA9 by binding to the homeobox

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Discovering microRNAs from deep sequencing data using miRDeep

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

miRBase: tools for microRNA genomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Specialization and evolution of endogenous small RNA pathways

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

MicroRNA-134 modulates the differentiation of mouse embryonic stem cells, where it causes post-transcriptional attenuation of Nanog and LRH1.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Target-specific requirements for enhancers of decapping in miRNA-mediated gene silencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Principles of microRNA regulation of a human cellular signaling network

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Real-time quantification of microRNAs by stem-loop RT-PCR

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

28 July 2018

The microRNA Registry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Computational identification of Drosophila microRNA genes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Computational and experimental identification of C. elegans microRNAs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Vertebrate microRNA genes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

A uniform system for microRNA annotation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

The lin-41 RBCC gene acts in the C. elegans heterochronic pathway between the let-7 regulatory RNA and the LIN-29 transcription factor

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

MiR-103a-3p targets the 5' UTR of GPRC5A in pancreatic cells

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Transcriptome-wide discovery of microRNA binding sites in human brain.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Circular RNAs are a large class of animal RNAs with regulatory potency

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Interactive exploration of RNA22 microRNA target predictions

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Birth and expression evolution of mammalian microRNA genes.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Unusually effective microRNA targeting within repeat-rich coding regions of mammalian mRNAs

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Discovery of microRNAs and other small RNAs in solid tumors

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

A novel class of small RNAs: tRNA-derived RNA fragments (tRFs).

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

A hexanucleotide element directs microRNA nuclear import.

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

MicroRNAs: genomics, biogenesis, mechanism, and function

27 September 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

27 September 2018

https://api.crossref.org/works/10.1073%2FPNAS.1420955112

The microRNAs of Caenorhabditis elegans

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Flexible sequence similarity searching with the FASTA3 program package

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4364231

Cutadapt removes adapter sequences from high-throughput sequencing reads

27 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1420955112

21 January 2018

Identifiers

DOI

10.1073/PNAS.1420955112

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25713380%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25713380%20AND%20SRC:MED&resulttype=core&format=json

4 June 2020

25713380

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25713380%20AND%20SRC:MED&resulttype=core&format=json