(Q35192458)

7 August 2017

title

SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information (English)

1 reference

7 August 2017

Marten Boetzer

1

1 reference

7 August 2017

Walter Pirovano

series ordinal

2

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7 August 2017

publication date

20 June 2014

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7 August 2017

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7 August 2017

volume

15

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7 August 2017

page(s)

211

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describes a project that uses

7 August 2017

MIRA

object named as

MIRA

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-15-211

0 references

cites work

A Benchmark Study on Error Assessment and Quality Control of CCS Reads Derived from the PacBio RS

1 reference

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Reducing assembly complexity of microbial genomes with single-molecule sequencing

28 July 2018

1 reference

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The MaSuRCA genome assembler

28 July 2018

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QUAST: quality assessment tool for genome assemblies

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4076250

Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4076250

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4076250

Finished bacterial genomes from shotgun sequence data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4076250

Hybrid error correction and de novo assembly of single-molecule sequencing reads

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4076250

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

28 July 2018

1 reference

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GAGE: A critical evaluation of genome assemblies and assembly algorithms

28 July 2018

1 reference

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Fast scaffolding with small independent mixed integer programs

28 July 2018

1 reference

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Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany

28 July 2018

1 reference

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Scaffolding pre-assembled contigs using SSPACE

28 July 2018

1 reference

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Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies

28 July 2018

1 reference

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SOPRA: Scaffolding algorithm for paired reads via statistical optimization

28 July 2018

1 reference

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The sequence and de novo assembly of the giant panda genome

28 July 2018

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ABySS: a parallel assembler for short read sequence data

28 July 2018

1 reference

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Velvet: algorithms for de novo short read assembly using de Bruijn graphs

28 July 2018

1 reference

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Basic local alignment search tool

28 July 2018

1 reference

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Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

28 July 2018

1 reference

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Improving PacBio long read accuracy by short read alignment

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4076250

A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes

27 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4076250

27 September 2018

Identifiers

DOI

10.1186/1471-2105-15-211

1 reference

journals/bmcbi/BoetzerP14

7 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

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7 August 2017

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