(Q35198329)

7 August 2017

title

PROMoter uPstream Transcripts share characteristics with mRNAs and are produced upstream of all three major types of mammalian promoters (English)

1 reference

7 August 2017

Eivind Valen

4

0 references

Albin Sandelin

object named as

Albin Sandelin

6

0 references

Torben Heick Jensen

object named as

Torben Heick Jensen

7

0 references

author name string

Pascal Preker

1

1 reference

7 August 2017

Kristina Almvig

2

1 reference

7 August 2017

Marianne S Christensen

3

1 reference

7 August 2017

Christophe K Mapendano

5

1 reference

7 August 2017

language of work or name

English

0 references

publication date

19 May 2011

1 reference

7 August 2017

published in

Nucleic Acids Research

1 reference

7 August 2017

volume

39

1 reference

7 August 2017

issue

16

1 reference

7 August 2017

page(s)

7179-7193

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

7 August 2017

copyright license

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans.

13 July 2018

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13 July 2018

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13 July 2018

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Most "dark matter" transcripts are associated with known genes

13 July 2018

1 reference

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A large fraction of extragenic RNA pol II transcription sites overlap enhancers

13 July 2018

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Genomic binding profiles of functionally distinct RNA polymerase III transcription complexes in human cells

13 July 2018

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Human RNA polymerase III transcriptomes and relationships to Pol II promoter chromatin and enhancer-binding factors

13 July 2018

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Pol II and its associated epigenetic marks are present at Pol III-transcribed noncoding RNA genes.

13 July 2018

1 reference

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Widespread transcription at neuronal activity-regulated enhancers

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

Close association of RNA polymerase II and many transcription factors with Pol III genes

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

Progression through the RNA polymerase II CTD cycle

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs

13 July 2018

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Biased chromatin signatures around polyadenylation sites and exons

13 July 2018

1 reference

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Evolution, biogenesis and function of promoter-associated RNAs

13 July 2018

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Divergent transcription: a new feature of active promoters

13 July 2018

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Transcriptional termination enhances protein expression in human cells

13 July 2018

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Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

13 July 2018

1 reference

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Widespread bidirectional promoters are the major source of cryptic transcripts in yeast

13 July 2018

1 reference

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Bidirectional promoters generate pervasive transcription in yeast

13 July 2018

1 reference

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PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls

13 July 2018

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13 July 2018

1 reference

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SMG6 promotes endonucleolytic cleavage of nonsense mRNA in human cells

13 July 2018

1 reference

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Divergent transcription from active promoters

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

RNA exosome depletion reveals transcription upstream of active human promoters

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

The exosome: a multipurpose RNA-decay machine

13 July 2018

1 reference

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The Nrd1–Nab3–Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

Quality control of mRNP in the nucleus

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

Promoter-proximal Pol II: when stalling speeds things up.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

Dynamic regulation of nucleosome positioning in the human genome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

Splicing promotes rapid and efficient mRNA export in mammalian cells

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

A 5' splice site enhances the recruitment of basal transcription initiation factors in vivo.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

RNA polymerase II pauses and associates with pre-mRNA processing factors at both ends of genes.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

Extragenic accumulation of RNA polymerase II enhances transcription by RNA polymerase III

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

The expanding RNA polymerase III transcriptome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

RNA-specific ribonucleotidyl transferases

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

High-resolution profiling of histone methylations in the human genome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

RNA maps reveal new RNA classes and a possible function for pervasive transcription

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

Contribution of Trf4/5 and the nuclear exosome to genome stability through regulation of histone mRNA levels in Saccharomyces cerevisiae

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

Systematic analysis of head-to-head gene organization: evolutionary conservation and potential biological relevance

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

RNA-quality control by the exosome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

Genome Network and FANTOM3: assessing the complexity of the transcriptome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

Activation by c-Myc of transcription by RNA polymerases I, II and III.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

RNA degradation by the exosome is promoted by a nuclear polyadenylation complex

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

A new yeast poly(A) polymerase complex involved in RNA quality control

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

Promoter proximal splice sites enhance transcription

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

Association of the histone methyltransferase Set2 with RNA polymerase II plays a role in transcription elongation

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

A polymerase switch in the synthesis of rRNA in Saccharomyces cerevisiae

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

A 7 bp mutation converts a human RNA polymerase II snRNA promoter into an RNA polymerase III promoter

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

Tiny RNAs associated with transcription start sites in animals.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

RNA polymerase plays both sides: vivid and bidirectional transcription around and upstream of active promoters.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

Genome-wide high-resolution mapping of exosome substrates reveals hidden features in the Arabidopsis transcriptome.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

Intranuclear distribution and local dynamics of RNA polymerase II during transcription activation.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3167610

RNA polymerase plays both sides: Vivid and bidirectional transcription around and upstream of active promoters

26 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKR370

Phosphorylation of the RNA polymerase II C-terminal domain dictates transcription termination choice

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21596787

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKR370

1 reference

7 August 2017

1 reference

7 August 2017

1 reference