(Q35229349)

7 August 2017

title

Testing hypotheses on the rate of molecular evolution in relation to gene expression using microRNAs (English)

1 reference

7 August 2017

1 reference

1 reference

9

Suhua Shi

1 reference

7 August 2017

Yang Shen

1

1 reference

7 August 2017

Yang Lv

2

1 reference

7 August 2017

Lei Huang

3

1 reference

7 August 2017

Wensheng Liu

4

1 reference

7 August 2017

Ming Wen

5

1 reference

7 August 2017

Tian Tang

6

1 reference

7 August 2017

Rui Zhang

7

1 reference

7 August 2017

Eric Hungate

8

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7 August 2017

Chung-I Wu

10

1 reference

7 August 2017

language of work or name

English

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publication date

12 September 2011

1 reference

Proceedings of the National Academy of Sciences of the United States of America

7 August 2017

published in

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7 August 2017

volume

108

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7 August 2017

issue

38

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7 August 2017

page(s)

15942-15947

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Dicer recognizes the 5' end of RNA for efficient and accurate processing

7 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

The developmental transcriptome of Drosophila melanogaster

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Widespread regulatory activity of vertebrate microRNA* species

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Modifications of small RNAs and their associated proteins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Complexity of the microRNA repertoire revealed by next-generation sequencing

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

The widespread regulation of microRNA biogenesis, function and decay

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Alternative processing of primary microRNA transcripts by Drosha generates 5' end variation of mature microRNA.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

The evolutionary consequences of erroneous protein synthesis.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Why is the correlation between gene importance and gene evolutionary rate so weak?

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

An endogenous small interfering RNA pathway in Drosophila

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

The regulatory activity of microRNA* species has substantial influence on microRNA and 3' UTR evolution

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Adaptive evolution of newly emerged micro-RNA genes in Drosophila

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Evolution of genes and genomes on the Drosophila phylogeny

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Intronic microRNA precursors that bypass Drosha processing

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

The frequency of translational misreading errors in E. coli is largely determined by tRNA competition.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

An integrated view of protein evolution

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Functional genomic analysis of the rates of protein evolution

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Phylogenetic shadowing and computational identification of human microRNA genes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Evolutionary rate depends on number of protein-protein interactions independently of gene expression level

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Nuclear export of microRNA precursors

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

The nuclear RNase III Drosha initiates microRNA processing

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

The small RNA profile during Drosophila melanogaster development

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Computational identification of Drosophila microRNA genes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Computational and experimental identification of C. elegans microRNAs

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Linkage limits the power of natural selection in Drosophila

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Essential genes are more evolutionarily conserved than are nonessential genes in bacteria

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

27 July 2018

Biochemical evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution.

27 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1110098108

Evolution of protein-coding genes in Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1110098108

Evolutionary rate in the protein interaction network

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1110098108

Protein dispensability and rate of evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1110098108

MicroRNA biogenesis: coordinated cropping and dicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1110098108

The microRNAs of Caenorhabditis elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1110098108

Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1110098108

Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1110098108

Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1110098108

Genome-wide midrange transcription profiles reveal expression level relationships in human tissue specification

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1110098108

Argonaute loading improves the 5' precision of both MicroRNAs and their miRNA* strands in flies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1110098108

The birth and death of microRNA genes in Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1110098108

The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1110098108

Adverse interactions between micro-RNAs and target genes from different species

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1110098108

miRBase: microRNA sequences, targets and gene nomenclature

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1110098108

The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1110098108

Fast folding and comparison of RNA secondary structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1110098108

Impact of translational error-induced and error-free misfolding on the rate of protein evolution

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Highly expressed genes in yeast evolve slowly.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Essential Genes Are More Evolutionarily Conserved Than Are Nonessential Genes in Bacteria

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3179107

Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate

8 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21911382

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1110098108

1 reference

release_ewvhzqhdcjezxpd4gkivgiin34

7 August 2017

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/ewvhzqhdcjezxpd4gkivgiin34

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

3179107

1 reference

7 August 2017

1 reference