(Q35234637)

7 August 2017

Mobile DNA in cancer. Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes (English)

1 reference

7 August 2017

35

Sarah O'Meara

0 references

Keiran Raine

10

Keiran Raine

0 references

Elli Papaemmanuil

17

Elli Papaemmanuil

1 reference

7 August 2017

63

Anne Vincent-Salomon

0 references

Jórunn Erla Eyfjörd

55

Jórunn Erla Eyfjörd

1 reference

7 August 2017

Anne-Lise Børresen-Dale

60

Anne-Lise Børresen-Dale

1 reference

7 August 2017

Anthony Fullam

13

0 references

Sancha Martin

Sancha Martin

33

0 references

Pablo Roman-Garcia

Pablo Roman-Garcia

12

0 references

Stephen Gamble

Stephen Gamble

38

0 references

Young Seok Ju

Young Seok Ju

3

0 references

Ludmil B. Alexandrov

Ludmil Alexandrov

27

0 references

Daniel Brewer

Daniel Brewer

42

0 references

Moritz Gerstung

Moritz Gerstung

14

0 references

Stian Knappskog

Stian Knappskog

18

0 references

David C. Wedge

David C Wedge

23

0 references

Peter Van Loo

Peter Van Loo

19

0 references

Christine Desmedt

Christine Desmedt

51

0 references

Ultan McDermott

Ultan McDermott

70

0 references

Sunil R Lakhani

Sunil R Lakhani

56

0 references

Tapio Visakorpi

Tapio Visakorpi

47

0 references

Niccolo Bolli

Niccolo Bolli

30

0 references

Paul N Span

Paul N Span

59

0 references

Rosalind Eeles

Rosalind Eeles

43

0 references

P. Andrew Futreal

66

P Andrew Futreal

1 reference

7 August 2017

58

Ola Myklebost

1 reference

7 August 2017

11

Andrew Menzies

1 reference

7 August 2017

26

Serena Nik-Zainal

1 reference

7 August 2017

50

Carlos Caldas

1 reference

7 August 2017

24

Jon W Teague

1 reference

7 August 2017

69

Michael R Stratton

1 reference

7 August 2017

45

David Neal

1 reference

7 August 2017

48

William B Isaacs

1 reference

7 August 2017

4

Inigo Martincorena

1 reference

7 August 2017

7

Gunes Gundem

1 reference

7 August 2017

22

John Marshall

1 reference

7 August 2017

21

Helen R Davies

1 reference

7 August 2017

16

Patrick S Tarpey

1 reference

7 August 2017

28

Sam Behjati

1 reference

7 August 2017

54

John A Foekens

1 reference

7 August 2017

52

Christos Sotiriou

1 reference

7 August 2017

20

Manasa Ramakrishna

1 reference

7 August 2017

15

Adam Shlien

1 reference

Christodoulos P Pipinikas

7 August 2017

8

Christodoulos P Pipinikas

1 reference

7 August 2017

Jose M C Tubio

1

1 reference

7 August 2017

Yilong Li

2

1 reference

7 August 2017

Susanna L Cooke

5

1 reference

7 August 2017

Marta Tojo

6

1 reference

7 August 2017

Jorge Zamora

9

1 reference

7 August 2017

Adam P Butler

25

1 reference

7 August 2017

Lucy R Yates

29

1 reference

7 August 2017

Laura Mudie

31

1 reference

7 August 2017

Claire Hardy

32

1 reference

7 August 2017

Stuart McLaren

34

1 reference

7 August 2017

Elizabeth Anderson

36

1 reference

7 August 2017

Mark Maddison

37

1 reference

7 August 2017

Christopher Foster

39

1 reference

7 August 2017

Anne Y Warren

40

1 reference

7 August 2017

Hayley Whitaker

41

1 reference

7 August 2017

Colin Cooper

44

1 reference

7 August 2017

Andy G Lynch

46

1 reference

7 August 2017

Laura Van't Veer

49

1 reference

7 August 2017

Sam Aparicio

53

1 reference

7 August 2017

Gilles Thomas

57

1 reference

7 August 2017

Andrea L Richardson

61

1 reference

7 August 2017

Marc Van de Vijver

62

1 reference

7 August 2017

Gert G Van den Eynden

64

1 reference

7 August 2017

Adrienne M Flanagan

65

1 reference

7 August 2017

Sam M Janes

67

1 reference

7 August 2017

G Steven Bova

68

1 reference

7 August 2017

Peter J Campbell

71

1 reference

7 August 2017

ICGC Breast Cancer Group

72

1 reference

7 August 2017

ICGC Bone Cancer Group

73

1 reference

7 August 2017

ICGC Prostate Cancer Group

74

1 reference

7 August 2017

language of work or name

English

0 references

publication date

1 August 2014

1 reference

7 August 2017

1 reference

7 August 2017

345

1 reference

7 August 2017

1251343

1 reference

7 August 2017

6196

1 reference

Processed pseudogenes acquired somatically during cancer development

7 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Discovery and saturation analysis of cancer genes across 21 tumour types

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Hypomethylation of long interspersed nuclear element-1 (LINE-1) leads to activation of proto-oncogenes in human colorectal cancer metastasis

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Punctuated evolution of prostate cancer genomes

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Transduction-specific ATLAS reveals a cohort of highly active L1 retrotransposons in human populations

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Endogenous retrotransposition activates oncogenic pathways in hepatocellular carcinoma

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Retrotransposition of gene transcripts leads to structural variation in mammalian genomes

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Germline mutations affecting the proofreading domains of POLE and POLD1 predispose to colorectal adenomas and carcinomas

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Single-neuron sequencing analysis of L1 retrotransposition and somatic mutation in the human brain

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Extensive somatic L1 retrotransposition in colorectal tumors

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Comprehensive genomic characterization of squamous cell lung cancers

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

An integrated encyclopedia of DNA elements in the human genome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

The origin and evolution of mutations in acute myeloid leukemia

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Comprehensive molecular characterization of human colon and rectal cancer

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Landscape of somatic retrotransposition in human cancers

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Sequence analysis of mutations and translocations across breast cancer subtypes

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Mutational processes molding the genomes of 21 breast cancers

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Tandem duplication of chromosomal segments is common in ovarian and breast cancer genomes

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Somatic retrotransposition alters the genetic landscape of the human brain

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

L1 retrotransposition in neurons is modulated by MeCP2.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

The patterns and dynamics of genomic instability in metastatic pancreatic cancer

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Natural mutagenesis of human genomes by endogenous retrotransposons

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

LINE-1 retrotransposition activity in human genomes

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

High-throughput sequencing reveals extensive variation in human-specific L1 content in individual human genomes

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

L1 retrotransposition in human neural progenitor cells

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Meiotic catastrophe and retrotransposon reactivation in male germ cells lacking Dnmt3L

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

L1 and HERV-W retrotransposons are hypomethylated in human ovarian carcinomas

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Mobile elements: drivers of genome evolution

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Hot L1s account for the bulk of retrotransposition in the human population

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Initial sequencing and analysis of the human genome

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Exon shuffling by L1 retrotransposition

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Cytosine methylation and the ecology of intragenomic parasites

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Many human L1 elements are capable of retrotransposition

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Disruption of the APC gene by a retrotransposal insertion of L1 sequence in a colon cancer

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Trans mobilization of genomic DNA as a mechanism for retrotransposon-mediated exon shuffling.

13 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4380235

Chromatin organization is a major influence on regional mutation rates in human cancer cells.

26 September 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251343

Fast and accurate long-read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251343

dbRIP: a highly integrated database of retrotransposon insertion polymorphisms in humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251343

A comprehensive map of mobile element insertion polymorphisms in humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251343

Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251343

Paired-end mapping reveals extensive structural variation in the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251343

MethPrimer: designing primers for methylation PCRs

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251343

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251343

Fast gapped-read alignment with Bowtie 2

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1251343

21 January 2018

Identifiers

DOI

10.1126/SCIENCE.1251343

1 reference

7 August 2017

1 reference

7 August 2017

1 reference