(Q35254112)

7 August 2017

title

GenoBase: comprehensive resource database of Escherichia coli K-12 (English)

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7 August 2017

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18

Daisuke Kihara

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7 August 2017

22

Hirotada Mori

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7 August 2017

Yuta Otsuka

1

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7 August 2017

Ai Muto

2

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7 August 2017

Rikiya Takeuchi

3

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7 August 2017

Chihiro Okada

4

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7 August 2017

Motokazu Ishikawa

5

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7 August 2017

Koichiro Nakamura

6

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7 August 2017

Natsuko Yamamoto

7

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7 August 2017

Hitomi Dose

8

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7 August 2017

Kenji Nakahigashi

9

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7 August 2017

Shigeki Tanishima

10

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7 August 2017

Sivasundaram Suharnan

11

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7 August 2017

Wataru Nomura

12

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7 August 2017

Toru Nakayashiki

13

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7 August 2017

Walid G Aref

14

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7 August 2017

Barry R Bochner

15

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7 August 2017

Tyrrell Conway

16

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7 August 2017

Michael Gribskov

17

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7 August 2017

Kenneth E Rudd

19

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7 August 2017

Yukako Tohsato

20

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7 August 2017

Barry L Wanner

21

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7 August 2017

language of work or name

English

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publication date

15 November 2014

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7 August 2017

published in

Nucleic Acids Research

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7 August 2017

volume

43

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7 August 2017

issue

Database issue

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7 August 2017

page(s)

D606-17

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Creative Commons Attribution 4.0 International

7 August 2017

copyright license

start time

9 November 2016

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Global transcriptional start site mapping using differential RNA sequencing reveals novel antisense RNAs in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Unprecedented high-resolution view of bacterial operon architecture revealed by RNA sequencing

27 July 2018

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Dissecting Escherichia coli outer membrane biogenesis using differential proteomics

27 July 2018

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Colony-live--a high-throughput method for measuring microbial colony growth kinetics--reveals diverse growth effects of gene knockouts in Escherichia coli

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

The binary protein-protein interaction landscape of Escherichia coli

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools.

27 July 2018

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27 July 2018

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EcoCyc: fusing model organism databases with systems biology

27 July 2018

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Systematic phenome analysis of Escherichia coli multiple-knockout mutants reveals hidden reactions in central carbon metabolism.

27 July 2018

1 reference

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High-throughput, quantitative analyses of genetic interactions in E. coli

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

eSGA: E. coli synthetic genetic array analysis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Using Chado to store genome annotation data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Profiling of Escherichia coli Chromosome database.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

A Chado case study: an ontology-based modular schema for representing genome-associated biological information

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Large-scale identification of protein-protein interaction of Escherichia coli K-12

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Escherichia coli K-12: a cooperatively developed annotation snapshot--2005

27 July 2018

1 reference

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ASAP: a resource for annotating, curating, comparing, and disseminating genomic data

27 July 2018

1 reference

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The coupon collector and the suppressor mutation: estimating the number of compensatory mutations by maximum likelihood.

27 July 2018

1 reference

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Phenotype microarray analysis of Escherichia coli K-12 mutants with deletions of all two-component systems

27 July 2018

1 reference

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ASAP, a systematic annotation package for community analysis of genomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Functional profiling of the Saccharomyces cerevisiae genome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Phenotype microarrays for high-throughput phenotypic testing and assay of gene function

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

The complete genome sequence of Escherichia coli K-12

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Construction of a contiguous 874-kb sequence of the Escherichia coli -K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 40.1-50.0 min region on the linkage map.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Systematic sequencing of the Escherichia coli genome: analysis of the 2.4-4.1 min (110,917-193,643 bp) region

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Spontaneous tandem genetic duplications in Salmonella typhimurium arise by unequal recombination between rRNA (rrn) cistrons

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Instability of a missense suppressor resulting from a duplication of genetic material

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Transduction of Merodiploidy: Induced Duplication of Recipient Genes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Systematic sequencing of theEscherichia coligenome: analysis of the 0 – 2.4 min region

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Tandem duplications of the histidine operon observed following generalized transduction in Salmonella typhimurium

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Gene Duplication in Bacteria: Alteration of Gene Dosage by Sister-chromosome Exchanges

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Tandem genetic duplications in Salmonella typhimurium: Amplification of the histidine operon

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Tandem chromosomal duplications in Salmonella typhimurium: Fusion of histidine genes to novel promoters

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Tandem genetic duplications in phage and bacteria

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Environmental dependency of gene knockouts on phenotype microarray analysis in Escherichia coli.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

The Escherichia coli K-12 ORFeome: a resource for comparative molecular microbiology

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Advanced tool for characterization of microbial cultures by combining cytomics and proteomics

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

An unstable intermediate carrying information from genes to ribosomes for protein synthesis

26 September 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

26 September 2018

https://api.crossref.org/works/10.1093%2FNAR%2FGKU1164

Update on the Keio collection of Escherichia coli single-gene deletion mutants

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Phenotype profiling of single gene deletion mutants of E. coli using Biolog technology

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

New technologies to assess genotype-phenotype relationships

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

Linkage map of Escherichia coli K-12, edition 10: the physical map.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383962

26 September 2018

Identifiers

DOI

10.1093/NAR/GKU1164

1 reference

journals/nar/OtsukaMTOINYDNTSNNABCGKRTWM15

7 August 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

7 August 2017

1 reference