(Q35266388)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21844201%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

title

Single-stranded noncoding RNAs mediate local epigenetic alterations at gene promoters in rat cell lines (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21844201%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21844201%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

Masahiro Uesaka

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21844201%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

Takuya Imamura

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21844201%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

author name string

Hiroko Shimokawa

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21844201%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

Naoki Yamamoto

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21844201%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

Yuji Mori

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21844201%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

Hiroko Tsukamura

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21844201%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

Kei-ichiro Maeda

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21844201%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

language of work or name

English

0 references

publication date

15 August 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21844201%20AND%20SRC:MED&resulttype=core&format=json

Journal of Biological Chemistry

10 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21844201%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

volume

286

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21844201%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

issue

40

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21844201%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

page(s)

34788-34799

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21844201%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

10 February 2020

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3186369/fullTextXML

inferred from PubMed Central ID database lookup

cites work

Hydroxylation of 5-methylcytosine by TET1 promotes active DNA demethylation in the adult brain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

Epigenetic setting for long-term expression of estrogen receptor α and androgen receptor in cells.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

Long noncoding RNA as modular scaffold of histone modification complexes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

DNA demethylation in hormone-induced transcriptional derepression

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

TopHat: discovering splice junctions with RNA-Seq

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

DNA demethylation in zebrafish involves the coupling of a deaminase, a glycosylase, and gadd45.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

RNA exosome depletion reveals transcription upstream of active human promoters

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

DNA methylation profile of tissue-dependent and differentially methylated regions (T-DMRs) in mouse promoter regions demonstrating tissue-specific gene expression

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

Transient cyclical methylation of promoter DNA.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

Drosophila PIWI associates with chromatin and interacts directly with HP1a

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

RIP-Chip: the isolation and identification of mRNAs, microRNAs and protein components of ribonucleoprotein complexes from cell extracts.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

The role of chromatin during transcription

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

Small dsRNAs induce transcriptional activation in human cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

Involvement of AGO1 and AGO2 in mammalian transcriptional silencing

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

Antisense transcription in the mammalian transcriptome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

Short double-stranded RNA induces transcriptional gene silencing in human cancer cells in the absence of DNA methylation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

The cell-specific expression of endothelial nitric-oxide synthase: a role for DNA methylation.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

DNA methylation-mediated control of Sry gene expression in mouse gonadal development

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

Epigenetic control of mouse Oct-4 gene expression in embryonic stem cells and trophoblast stem cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

Regulation of heterochromatic silencing and histone H3 lysine-9 methylation by RNAi

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

The non-coding Air RNA is required for silencing autosomal imprinted genes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

Non-coding RNAs: the architects of eukaryotic complexity

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

The evolution of controlled multitasked gene networks: the role of introns and other noncoding RNAs in the development of complex organisms

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

Translating the Histone Code

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

Histone methylation versus histone acetylation: new insights into epigenetic regulation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

Phosphorylation of microtubule-associated protein 2 (MAP2) and its relevance for the regulation of the neuronal cytoskeleton function.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

Downregulation of DNA (cytosine-5-)methyltransferase is a late event in NGF-induced PC12 cell differentiation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

An alternative promoter in the mouse major histocompatibility complex class II I-Abeta gene: implications for the origin of CpG islands

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

Neurofilaments are obligate heteropolymers in vivo

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

Assembly of type IV neuronal intermediate filaments in nonneuronal cells in the absence of preexisting cytoplasmic intermediate filaments

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

Functional analysis and growth factor regulation of the human vimentin promoter

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

A double-stranded RNA unwinding activity introduces structural alterations by means of adenosine to inosine conversions in mammalian cells and Xenopus eggs

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

An antisense mRNA directs the covalent modification of the transcript encoding fibroblast growth factor in Xenopus oocytes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

Inhibition of c-erbA mRNA splicing by a naturally occurring antisense RNA.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

Widespread occurrence of intermediate-sized filaments of the vimentin-type in cultured cells from diverse vertebrates

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3186369

Histone methylation in transcriptional control

27 July 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.275750

Global identification of human transcribed sequences with genome tiling arrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.275750

The transcriptional landscape of the mammalian genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.275750

Targeted mutagenesis of Tsix leads to nonrandom X inactivation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.275750

Higher-order structure in pericentric heterochromatin involves a distinct pattern of histone modification and an RNA component

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.275750

Non-coding RNA directed DNA demethylation of Sphk1 CpG island.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.275750

CpG island of rat sphingosine kinase-1 gene: tissue-dependent DNA methylation status and multiple alternative first exons

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.275750

Dynamic transcriptomes during neural differentiation of human embryonic stem cells revealed by short, long, and paired-end sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111.275750

E2F2 converts reversibly differentiated PC12 cells to an irreversible, neurotrophin-dependent state

21 January 2018

1 reference

12 December 2020

Intermediate filaments: cell-type-specific markers in differentiation and pathology

1 reference

12 December 2020

The dynamics of nerve growth factor-induced neurofilament and vimentin filament expression and organization in PC12 cells

1 reference

12 December 2020

Depolarization maintains neurites and priming of PC12 cells after nerve growth factor withdrawal

1 reference

12 December 2020

Identifiers

DOI

10.1074/JBC.M111.275750

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21844201%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21844201%20AND%20SRC:MED&resulttype=core&format=json

10 February 2020

PubMed publication ID

21844201

1 reference