Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q35292030)
Watch
English
Prediction of uridine modifications in tRNA sequences
scientific article
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PubMed publication ID
25272949
retrieved
7 August 2017
title
Prediction of uridine modifications in tRNA sequences
(English)
1 reference
stated in
Europe PubMed Central
PubMed publication ID
25272949
retrieved
7 August 2017
author
G. P. S. Raghava
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
4287530
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25272949%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 June 2020
author name string
Bharat Panwar
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
4287530
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25272949%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 June 2020
publication date
2 October 2014
1 reference
stated in
Europe PubMed Central
PubMed publication ID
25272949
retrieved
7 August 2017
published in
BMC Bioinformatics
1 reference
stated in
Europe PubMed Central
PMC publication ID
4287530
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25272949%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 June 2020
volume
15
1 reference
stated in
Europe PubMed Central
PMC publication ID
4287530
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25272949%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 June 2020
page(s)
326
1 reference
stated in
Europe PubMed Central
PMC publication ID
4287530
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25272949%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 June 2020
exact match
https://scigraph.springernature.com/pub.10.1186/1471-2105-15-326
0 references
cites work
Prediction and classification of ncRNAs using structural information
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Prediction of vitamin interacting residues in a vitamin binding protein using evolutionary information
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
MODOMICS: a database of RNA modification pathways--2013 update
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
A role for tRNA modifications in genome structure and codon usage
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Functional loss of Cdkal1, a novel tRNA modification enzyme, causes the development of type 2 diabetes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Designing of highly effective complementary and mismatch siRNAs for silencing a gene
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Deficit of tRNA(Lys) modification by Cdkal1 causes the development of type 2 diabetes in mice
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Analysis and prediction of cancerlectins using evolutionary and domain information.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Predicting sub-cellular localization of tRNA synthetases from their primary structures.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Prediction and classification of aminoacyl tRNA synthetases using PROSITE domains
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
tRNA stabilization by modified nucleotides
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
VARNA: Interactive drawing and editing of the RNA secondary structure
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
MODOMICS: a database of RNA modification pathways. 2008 update
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Bringing order to translation: the contributions of transfer RNA anticodon-domain modifications
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Degradation of several hypomodified mature tRNA species in Saccharomyces cerevisiae is mediated by Met22 and the 5'-3' exonucleases Rat1 and Xrn1.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
tRNA's modifications bring order to gene expression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
tRNA's wobble decoding of the genome: 40 years of modification
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Post-transcriptional nucleotide modification and alternative folding of RNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Compilation of tRNA sequences and sequences of tRNA genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
WebLogo: A Sequence Logo Generator
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Nuclear surveillance and degradation of hypomodified initiator tRNAMet in S. cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Decoding the genome: a modified view
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Roles of 5-substituents of tRNA wobble uridines in the recognition of purine-ending codons
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Vienna RNA secondary structure server
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Improvement of reading frame maintenance is a common function for several tRNA modifications
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Aminoacyl-tRNA synthesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Transfer RNA recognition by aminoacyl-tRNA synthetases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Modification defect at anticodon wobble nucleotide of mitochondrial tRNAs(Leu)(UUR) with pathogenic mutations of mitochondrial myopathy, encephalopathy, lactic acidosis, and stroke-like episodes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Universal rules and idiosyncratic features in tRNA identity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
The presence of modified nucleotides is required for cloverleaf folding of a human mitochondrial tRNA
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
The importance of being modified: roles of modified nucleosides and Mg2+ in RNA structure and function.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Conformational flexibility in RNA: the role of dihydrouridine
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Prediction of Protein Structural Classes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Modified nucleotides of tRNA(3Lys) modulate primer/template loop-loop interaction in the initiation complex of HIV-1 reverse transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Changes of post-transcriptional modification of wye base in tumor-specific tRNAPhe
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Codon--anticodon pairing: the wobble hypothesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Minor components in transfer RNA: their characterization, location, and function.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
A novel type of + 1 frameshift suppressor: a base substitution in the anticodon stem of a yeast mitochondrial serine-tRNA causes frameshift suppression.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Seven, eight and nine-membered anticodon loop mutants of tRNA(2Arg) which cause +1 frameshifting. Tolerance of DHU arm and other secondary mutations.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Specific inhibition of transfer RNA methylation and modification in tissues of mice treated with 5-fluorouracil
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
12 July 2018
Modulation in the activity of lactate dehydrogenase and level of c-Myc and c-Fos by modified base queuine in cancer
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
26 September 2018
An overview of statistical learning theory.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
26 September 2018
Mutational analysis reveals two independent molecular requirements during transfer RNA selection on the ribosome.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
26 September 2018
Rapid tRNA decay can result from lack of nonessential modifications.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
26 September 2018
The role of modifications in codon discrimination by tRNA(Lys)UUU.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
26 September 2018
Modified nucleotides in tRNA(Lys) and tRNA(Val) are important for translocation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
26 September 2018
Accurate translation of the genetic code depends on tRNA modified nucleosides.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
26 September 2018
Q-modification of tRNAs in human brain tumors.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4287530
retrieved
26 September 2018
A 2-thiouridine derivative in tRNAGlu is a positive determinant for aminoacylation by Escherichia coli glutamyl-tRNA synthetase
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25272949
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Development of type 2 diabetes caused by a deficiency of a tRNA(lys) modification
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25272949
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The modification of the wobble base of tRNAGlu modulates the translation rate of glutamic acid codons in vivo
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25272949
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
[Codases: fifty years after]
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25272949
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1186/1471-2105-15-326
1 reference
stated in
Europe PubMed Central
PMC publication ID
4287530
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25272949%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 June 2020
DBLP publication ID
journals/bmcbi/PanwarR14
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
Dimensions Publication ID
1036850027
0 references
PMC publication ID
4287530
1 reference
stated in
Europe PubMed Central
PMC publication ID
4287530
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25272949%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 June 2020
PubMed publication ID
25272949
1 reference
stated in
Europe PubMed Central
PMC publication ID
4287530
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25272949%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 June 2020
ResearchGate publication ID
266567541
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit
