(Q35321610)

7 August 2017

In silico partitioning and transmembrane insertion of hydrophobic peptides under equilibrium conditions (English)

1 reference

7 August 2017

transmembrane protein

0 references

1 reference

Stephen H White

3

0 references

Jeremy C Smith

object named as

Jeremy C Smith

series ordinal

2

0 references

author name string

Jakob P Ulmschneider

series ordinal

1

1 reference

PubMed ID

21861483

7 August 2017

Martin B Ulmschneider

series ordinal

4

1 reference

PubMed ID

21861483

7 August 2017

language of work or name

English

0 references

publication date

14 September 2011

1 reference

Journal of the American Chemical Society

7 August 2017

1 reference

7 August 2017

133

1 reference

7 August 2017

39

1 reference

7 August 2017

15487-15495

1 reference

Folding Simulations of the Transmembrane Helix of Virus Protein U in an Implicit Membrane Model

7 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Free-energy cost for translocon-assisted insertion of membrane proteins

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Arginine in membranes: the connection between molecular dynamics simulations and translocon-mediated insertion experiments

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

The hydrophobic core of the Sec61 translocon defines the hydrophobicity threshold for membrane integration

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Insertion of short transmembrane helices by the Sec61 translocon

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Effect of sequence hydrophobicity and bilayer width upon the minimum length required for the formation of transmembrane helices in membranes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Monte Carlo folding of trans-membrane helical peptides in an implicit generalized Born membrane.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Formation of transmembrane helices in vivo--is hydrophobicity all that matters?

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Hydration of POPC bilayers studied by 1H-PFG-MAS-NOESY and neutron diffraction

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Transmembrane helices before, during, and after insertion

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Interfacial folding and membrane insertion of designed peptides studied by molecular dynamics simulations

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Recognition of transmembrane helices by the endoplasmic reticulum translocon.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Modulation of the bilayer thickness of exocytic pathway membranes by membrane proteins rather than cholesterol

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Free-energy determinants of alpha-helix insertion into lipid bilayers

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Solvation energies of amino acid side chains and backbone in a family of host-guest pentapeptides.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Lipid bilayer thickness varies linearly with acyl chain length in fluid phosphatidylcholine vesicles

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Sampling efficiency in explicit and implicit membrane environments studied by peptide folding simulations

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Molecular code for transmembrane-helix recognition by the Sec61 translocon

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Membrane protein insertion: the biology-physics nexus

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

A generalized born implicit-membrane representation compared to experimental insertion free energies.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Monte Carlo vs molecular dynamics for all-atom polypeptide folding simulations

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Do protein-lipid interactions determine the recognition of transmembrane helices at the ER translocon?

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Membrane insertion of a potassium-channel voltage sensor

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Interfacial folding and membrane insertion of a designed helical peptide

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

X-ray structure of a protein-conducting channel

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Membrane protein folding: beyond the two stage model.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

The activation energy for insertion of transmembrane alpha-helices is dependent on membrane composition

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Designing transmembrane alpha-helices that insert spontaneously

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Membrane protein folding and stability: physical principles

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Folding of amphipathic alpha-helices on membranes: energetics of helix formation by melittin

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3191535

Enhancement of steric repulsion with temperature in oriented lipid multilayers

26 September 2018

1 reference

12 December 2020

United Atom Lipid Parameters for Combination with the Optimized Potentials for Liquid Simulations All-Atom Force Field

1 reference

12 December 2020

Folding is not required for bilayer insertion: replica exchange simulations of an alpha-helical peptide with an explicit lipid bilayer

1 reference

12 December 2020

Mechanism and kinetics of peptide partitioning into membranes from all-atom simulations of thermostable peptides

1 reference

12 December 2020

Identifiers

DOI

10.1021/JA204042F

1 reference

7 August 2017

1 reference

7 August 2017

1 reference

PubMed ID

21861483