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Characterizing immune repertoires by high throughput sequencing: strategies and applications.
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scholarly article
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Europe PubMed Central
PMCID
4390416
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25306219%20AND%20SRC:MED&resulttype=core&format=json
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21 February 2020
review article
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Europe PubMed Central
title
Characterizing immune repertoires by high throughput sequencing: strategies and applications
(English)
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stated in
Europe PubMed Central
PMCID
4390416
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25306219%20AND%20SRC:MED&resulttype=core&format=json
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21 February 2020
main subject
high-throughput sequencing
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based on heuristic
inferred from title
author
Brad R Rosenberg
series ordinal
2
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Europe PubMed Central
PMCID
4390416
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25306219%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 February 2020
author name string
Jorg J A Calis
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1
1 reference
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Europe PubMed Central
PMCID
4390416
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25306219%20AND%20SRC:MED&resulttype=core&format=json
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21 February 2020
publication date
8 October 2014
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Europe PubMed Central
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4390416
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21 February 2020
published in
Trends in Immunology
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4390416
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25306219%20AND%20SRC:MED&resulttype=core&format=json
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21 February 2020
volume
35
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stated in
Europe PubMed Central
PMCID
4390416
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25306219%20AND%20SRC:MED&resulttype=core&format=json
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21 February 2020
issue
12
1 reference
stated in
Europe PubMed Central
PMCID
4390416
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25306219%20AND%20SRC:MED&resulttype=core&format=json
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21 February 2020
page(s)
581-590
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Europe PubMed Central
PMCID
4390416
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21 February 2020
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Mother and child T cell receptor repertoires: deep profiling study.
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Preparing unbiased T-cell receptor and antibody cDNA libraries for the deep next generation sequencing profiling.
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Minimal residual disease monitoring with high-throughput sequencing of T cell receptors in cutaneous T cell lymphoma
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Ultra-deep T cell receptor sequencing reveals the complexity and intratumour heterogeneity of T cell clones in renal cell carcinomas
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
Tumor-infiltrating lymphocytes in colorectal tumors display a diversity of T cell receptor sequences that differ from the T cells in adjacent mucosal tissue
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
The gracefully aging immune system
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
Rheumatoid arthritis synovial tissue harbours dominant B-cell and plasma-cell clones associated with autoreactivity.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
Quantitative assessment of T cell repertoire recovery after hematopoietic stem cell transplantation.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
Diagnostic applications of high-throughput DNA sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
Shaping of human germline IgH repertoires revealed by deep sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
Pacific biosciences sequencing technology for genotyping and variation discovery in human data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
Age-Related Changes in Human Peripheral Blood IGH Repertoire Following Vaccination
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
High-throughput antibody sequencing reveals genetic evidence of global regulation of the naïve and memory repertoires that extends across individuals.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
High-throughput sequencing detects minimal residual disease in acute T lymphoblastic leukemia.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
Performance comparison of benchtop high-throughput sequencing platforms
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
Memory B cell antibodies to HIV-1 gp140 cloned from individuals infected with clade A and B viruses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
Deep sequencing of the human TCRγ and TCRβ repertoires suggests that TCRβ rearranges after αβ and γδ T cell commitment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
Vaccination-induced changes in human B-cell repertoire and pneumococcal IgM and IgA antibody at different ages.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
A mechanism for TCR sharing between T cell subsets and individuals revealed by pyrosequencing.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
Clustering-based identification of clonally-related immunoglobulin gene sequence sets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
Overlap and effective size of the human CD8+ T cell receptor repertoire
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
Measurement and clinical monitoring of human lymphocyte clonality by massively parallel VDJ pyrosequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
High throughput sequencing reveals a complex pattern of dynamic interrelationships among human T cell subsets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
Cloning and expression of murine Ig genes from single B cells.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
High-throughput sequencing of the zebrafish antibody repertoire
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
Broad diversity of neutralizing antibodies isolated from memory B cells in HIV-infected individuals
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
Ab-origin: an enhanced tool to identify the sourcing gene segments in germline for rearranged antibodies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
IgTree: creating Immunoglobulin variable region gene lineage trees.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
Methods for comparing the diversity of samples of the T cell receptor repertoire
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
No evidence for the use of DIR, D-D fusions, chromosome 15 open reading frames or VH replacement in the peripheral repertoire was found on application of an improved algorithm, JointML, to 6329 human immunoglobulin H rearrangements.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
Characterization of the human Ig heavy chain antigen binding complementarity determining region 3 using a newly developed software algorithm, JOINSOLVER.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
A novel approach to the analysis of specificity, clonality, and frequency of HIV-specific T cell responses reveals a potential mechanism for control of viral escape.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4390416
retrieved
26 September 2018
Proteomics-directed cloning of circulating antiviral human monoclonal antibodies
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25306219
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A proteomics approach for the identification and cloning of monoclonal antibodies from serum
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25306219
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Lymphokine mRNA and T cell multireceptor mRNA of the Ig super gene family are reciprocally modulated during human T cell activation
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25306219
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1016/J.IT.2014.09.004
1 reference
stated in
Europe PubMed Central
PMCID
4390416
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25306219%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 February 2020
PMCID
4390416
1 reference
stated in
Europe PubMed Central
PMCID
4390416
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25306219%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 February 2020
PubMed ID
25306219
1 reference
stated in
Europe PubMed Central
PMCID
4390416
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25306219%20AND%20SRC:MED&resulttype=core&format=json
retrieved
21 February 2020
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