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Nascent transcription affected by RNA polymerase IV in Zea mays
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4391576
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29 February 2020
title
Nascent transcription affected by RNA polymerase IV in Zea mays
(English)
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4391576
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29 February 2020
main subject
maize
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author
Joy-El R B Talbot
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2
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4391576
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29 February 2020
Natalie C Deans
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3
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4391576
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29 February 2020
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Karl F Erhard
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1
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4391576
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29 February 2020
Allison E McClish
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4
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29 February 2020
Jay B Hollick
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5
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4391576
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29 February 2020
language of work or name
English
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publication date
4 February 2015
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4391576
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29 February 2020
published in
Genetics
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29 February 2020
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199
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29 February 2020
issue
4
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29 February 2020
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1107-1125
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4391576
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29 February 2020
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DDR complex facilitates global association of RNA polymerase V to promoters and evolutionarily young transposons
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Repeat associated small RNAs vary among parents and following hybridization in maize
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Trans chromosomal methylation in Arabidopsis hybrids
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Strong epigenetic similarity between maize centromeric and pericentromeric regions at the level of small RNAs, DNA methylation and H3 chromatin modifications.
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27 July 2018
The genome of the mesopolyploid crop species Brassica rapa
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Genome-wide characterization of the HD-ZIP IV transcription factor family in maize: preferential expression in the epidermis.
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Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs
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Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome
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27 July 2018
A dominant mutation in mediator of paramutation2, one of three second-largest subunits of a plant-specific RNA polymerase, disrupts multiple siRNA silencing processes
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27 July 2018
Production and processing of siRNA precursor transcripts from the highly repetitive maize genome
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27 July 2018
Divergent transcription: a new feature of active promoters
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27 July 2018
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
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27 July 2018
Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II
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27 July 2018
Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters
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27 July 2018
Distinct size distribution of endogeneous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant
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27 July 2018
A paramutation phenomenon is involved in the genetics of maize low phytic acid1-241 (lpa1-241) trait
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27 July 2018
PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis
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27 July 2018
A novel Snf2 protein maintains trans-generational regulatory states established by paramutation in maize
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27 July 2018
Epigenetic regulation of flowering
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27 July 2018
Maize sex determination and abaxial leaf fates are canalized by a factor that maintains repressed epigenetic states
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27 July 2018
Multiple trans-sensing interactions affect meiotically heritable epigenetic states at the maize pl1 locus
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27 July 2018
Role of RNA polymerase IV in plant small RNA metabolism
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27 July 2018
A Test for Somatic Mutation in the Origination of Conversion-Type Inheritance at the B Locus in Maize
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27 July 2018
A Genetic Change Associated with the R Locus in Maize Which Is Directed and Potentially Reversible
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27 July 2018
Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus
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27 July 2018
Initiation, establishment, and maintenance of heritable MuDR transposon silencing in maize are mediated by distinct factors
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27 July 2018
An RNA-dependent RNA polymerase is required for paramutation in maize
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27 July 2018
RNA-mediated non-mendelian inheritance of an epigenetic change in the mouse
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27 July 2018
DEMETER and REPRESSOR OF SILENCING 1 encode 5-methylcytosine DNA glycosylases.
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27 July 2018
Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis.
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27 July 2018
Rmr6 maintains meiotic inheritance of paramutant states in Zea mays
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27 July 2018
RNA polymerase IV directs silencing of endogenous DNA.
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27 July 2018
Chromatin conversations: mechanisms and implications of paramutation
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27 July 2018
Chromosome organization and genic expression
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27 July 2018
Transgene-induced silencing identifies sequences involved in the establishment of paramutation of the maize p1 gene
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27 July 2018
Paramutation of the r1 locus of maize is associated with increased cytosine methylation.
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27 July 2018
Allelic interactions heritably alter the activity of a metastable maize pl allele.
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27 July 2018
The RNA polymerase II molecule at the 5' end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged.
1 reference
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PubMed Central
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27 July 2018
Genetic perturbation of the maize methylome
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PubMed Central
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26 September 2018
Noncoding transcription by alternative RNA polymerases dynamically regulates an auxin-driven chromatin loop.
1 reference
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PubMed Central
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26 September 2018
RNA-directed DNA methylation: an epigenetic pathway of increasing complexity
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26 September 2018
Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation.
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26 September 2018
Paramutation in Drosophila linked to emergence of a piRNA-producing locus.
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PubMed Central
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26 September 2018
required to maintain repression2 is a novel protein that facilitates locus-specific paramutation in maize
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391576
retrieved
26 September 2018
Evolutionary history of plant multisubunit RNA polymerases IV and V: subunit origins via genome-wide and segmental gene duplications, retrotransposition, and lineage-specific subfunctionalization.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391576
retrieved
26 September 2018
BEDTools: a flexible suite of utilities for comparing genomic features
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391576
retrieved
26 September 2018
Loss of RNA-dependent RNA polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391576
retrieved
26 September 2018
Tissue- and expression level-specific chromatin looping at maize b1 epialleles.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391576
retrieved
26 September 2018
RNA polymerase IV functions in paramutation in Zea mays.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391576
retrieved
26 September 2018
Divergent transcription from active promoters
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391576
retrieved
26 September 2018
Large-scale survey of cytosine methylation of retrotransposons and the impact of readout transcription from long terminal repeats on expression of adjacent rice genes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391576
retrieved
26 September 2018
Targets of RNA-directed DNA methylation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391576
retrieved
26 September 2018
Small RNA-mediated chromatin silencing directed to the 3' region of the Arabidopsis gene encoding the developmental regulator, FLC.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391576
retrieved
26 September 2018
A multistep process gave rise to RNA polymerase IV of land plants.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391576
retrieved
26 September 2018
Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391576
retrieved
26 September 2018
Differential chromatin structure within a tandem array 100 kb upstream of the maize b1 locus is associated with paramutation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391576
retrieved
26 September 2018
A poplar tree proteinase inhibitor-like gene promoter is responsive to wounding in transgenic tobacco
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4391576
retrieved
26 September 2018
Paramutation at the R locus in maize
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25653306
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Paramutation at the sulfurea locus of Lycopersicon esculentum Mill. : VII. Determination of the time of occurrence of paramutation by the quantitative evaluation of the variegation
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25653306
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1534/GENETICS.115.174714
1 reference
stated in
Europe PubMed Central
PMC publication ID
4391576
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25653306%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
PMC publication ID
4391576
1 reference
stated in
Europe PubMed Central
PMC publication ID
4391576
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25653306%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
PubMed publication ID
25653306
1 reference
stated in
Europe PubMed Central
PMC publication ID
4391576
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25653306%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 February 2020
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