(Q35392687)

8 August 2017

title

A phylogeny-based benchmarking test for orthology inference reveals the limitations of function-based validation (English)

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8 August 2017

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8 August 2017

7

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8 August 2017

Christian von Mering

6

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Sean T Powell

object named as

Sean Powell

series ordinal

4

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Tobias Doerks

series ordinal

5

object named as

Tobias Doerks

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8 August 2017

1

Kalliopi Trachana

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8 August 2017

Tomas Larsson

3

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8 August 2017

language of work or name

English

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publication date

4 November 2014

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8 August 2017

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8 August 2017

volume

9

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8 August 2017

issue

11

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8 August 2017

page(s)

e111122

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Creative Commons Attribution 4.0 International

8 August 2017

copyright license

start time

4 November 2014

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April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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Orthology prediction at scalable resolution by phylogenetic tree analysis

12 July 2018

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Phylogenetic reconstruction of orthology, paralogy, and conserved synteny for dog and human

12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219706

Horizontal gene transfer in prokaryotes: quantification and classification

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219706

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12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219706

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219706

The use of gene clusters to infer functional coupling

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219706

A genomic perspective on protein families

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219706

Effects of character weighting and species sampling on phylogeny reconstruction: a case study based on DNA sequence data in cetaceans

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219706

Distinguishing Homologous from Analogous Proteins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219706

Basic local alignment search tool

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219706

Database resources of the National Center for Biotechnology Information

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219706

Automatic clustering of orthologs and inparalogs shared by multiple proteomes

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219706

Biases in phylogenetic estimation can be caused by random sequence segments.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4219706

Genomes in Flux: The Evolution of Archaeal and Proteobacterial Gene Content

26 September 2018

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Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0111122

Genome architecture and global gene regulation in bacteria: making progress towards a unified model?

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25369365

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

1 reference

https://pubmed.ncbi.nlm.nih.gov/25369365

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0111122

1 reference

8 August 2017

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1 reference

8 August 2017

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